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Issues: BioinformaticsFMRP/TCGAbiolinks

discrepancy in number of samples
#458 opened Apr 19, 2021 by Xiaofei-git
Open
Update TCGAbiolinks handle new projects
#521 opened Jun 14, 2022 by tiagochst
Open
GDCprepare_clinic bug
#546 opened Sep 29, 2022 by todaroroad
Open 3
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250 Open 358 Closed
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Issues list

GDCprepare Error adding clinical information to samples
#629 opened May 16, 2024 by IvanEllson
GEO:Error in left_join(): ! Can't join x$ID with y$ID due to incompatible types. ℹ x$ID is a <character>. ℹ y$ID is a <integer>.
#628 opened May 16, 2024 by zhihuawang2015
1
dplyr::bind_rows(): ! Can't combine ..368$Tumor_Seq_Allele2 and ..369$Tumor_Seq_Allele2 .One error problem occurred caused by data type during using GDCprepare to handle BRCA data
#627 opened Apr 24, 2024 by Lancelof2019
5
BRAF V600E mutation why turn into V640E mutaion in TCGA COAD cohort?
#624 opened Mar 23, 2024 by LULUCHIU
1
Clinical data for CTSP_DLBCL1 does not work
#622 opened Mar 15, 2024 by akauko
Why is there no proteomic data available in the CPTAC project?
#620 opened Mar 4, 2024 by CN-Geminghui
Potential Bug: GDC Prepare does not work for breast cancer data
#619 opened Feb 19, 2024 by fabianjkrueger
GDCdownload error: 'No such file or directory'
#618 opened Feb 17, 2024 by Mincana-Huang
No clinical data added to TARGET-NBL
#616 opened Jan 11, 2024 by AndriesDeKoker
4
Mabye a bug in TCGAanalyze_SurvivalKM
#615 opened Jan 11, 2024 by fw1121
4
How to Move the Legend in TCGAanalyze_SurvivalKM
#614 opened Jan 5, 2024 by sjroth
Error in GDCquery_clinic(project ="TCGA-TGCT")
#613 opened Dec 18, 2023 by ayueme
Test suite issue on armel, armhf and ppc64el architecture
#612 opened Dec 18, 2023 by tillea
CPTAC-3 GDCPrepare with scRNA-seq data
#611 opened Nov 17, 2023 by LeaLe88
1
Problem for merging two summarizedExperiments objects
#608 opened Nov 2, 2023 by NicoTaj
GDCprepare not working on Mac OS Sonoma
#606 opened Oct 21, 2023 by maxm-4
1
different sample size between TCGA portal and TCGAbiolinks package
#605 opened Oct 12, 2023 by tyasird
4
Prepare for upcoming Seurat v5 release
#603 opened Oct 3, 2023 by Gesmira
1
Tumor.purity Source link not working
#602 opened Sep 28, 2023 by richardheery
1
Cannot connect to ExperimentHub server
#601 opened Sep 26, 2023 by bailey28
GDCprepare not downloading clinical data anymore
#598 opened Sep 11, 2023 by CianMurphy
how to download the transcript-level not the gene-level data from TCGA or CPTAC?
#596 opened Aug 27, 2023 by zihaoxingstudy1
getProjectSummary() missing
#595 opened Aug 17, 2023 by idmehta
1
Different clinical results when using GDCprepare_clinic (clinical.info = "patient" vs "follow_up")
#594 opened Aug 4, 2023 by buzhizhang121
1
How do I find information on papers in colData
#593 opened Jul 22, 2023 by barbarashih
ProTip! Exclude everything labeled bug with -label:bug.