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1. Paratype Paratype Public

   Assign genotypes to Salmonella Paratyphi A isolates using their whole-genome data.

   Python 7 1

2. extract_position_from_genbank extract_position_from_genbank Public

   Detect phage, repeat and variation regions in genome using a genbank file

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3. filter_SNP_quality filter_SNP_quality Public

   Filter VCF file for unambiguous bases and high quality

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4. paratyphiA_acrB717_screening paratyphiA_acrB717_screening Public

   Detect AcrB-717 mutation from mapped VCF file of Salmonella Paratyphi A

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5. ncovBangladesh ncovBangladesh Public

6. CHRF_Paratyphi_scripts CHRF_Paratyphi_scripts Public

   Other scripts and color scheme used in the article for Paratype

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