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HyMD-tutorial

Monoatomic particles with no interactions.


Bonded interactions

Monoatomic chains of particles connected by two-particle bonds.

Monoatomic chains of particles connected by two-particle bonds with bending stiffness due to anglar three-particle bonds.

Monoatomic chains of particles connected by two-particle bonds and four-particle torsional bonds.


Field interactions

Binary A/B monoatomic particles with χ-interactions.

Diblock A/B co-polymer with two-particle bonds and three-particle bonds and χ-interactions.

Model DPPC with two-particle bonds and three-particle bonds and χ-interactions self-assembling into a bilayer.


Electrostatic interactions

Model peptide with two-particle bonds and three-particle bonds and four-particle torsional bonds and χ-interactions and dipole reconstructed electrostatic interactions.

Model SDS surfactant with two-particle bonds and three-particle bonds and χ-interactions and electrostatic interactions self-assembling into a micelle.