GitHub - ChengLiLab/myeloma: multiple myeloma project

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Name		Name	Last commit message	Last commit date
Latest commit History 7 Commits
codes		codes
CFS_analysis.R		CFS_analysis.R
CNV level interactions.R		CNV level interactions.R
CNV_boundary_TAD_boundary.R		CNV_boundary_TAD_boundary.R
CNV_boundary_TAD_boundary_GM12878.R		CNV_boundary_TAD_boundary_GM12878.R
CNV_database_Multiple_Myeloma_boudary_TAD_boundary.R		CNV_database_Multiple_Myeloma_boudary_TAD_boundary.R
CNV_database_boudary_TAD_boundary.R		CNV_database_boudary_TAD_boundary.R
CNV_dgv.R		CNV_dgv.R
CombineTwoChromosomes.R		CombineTwoChromosomes.R
Distance_distribution_of_CNV_Block_boundary_and_TAD_boudary.R		Distance_distribution_of_CNV_Block_boundary_and_TAD_boudary.R
DrawCNVFigure.R		DrawCNVFigure.R
FindCompartmentBed.R		FindCompartmentBed.R
FindLocalHicMatrix.R		FindLocalHicMatrix.R
GM12878_TAD_level_local_interactions.R		GM12878_TAD_level_local_interactions.R
GenerateWholeGenomeMatrix.R		GenerateWholeGenomeMatrix.R
GetCNVofRegions.R		GetCNVofRegions.R
Interactions between TADs on either side of a CNV.R		Interactions between TADs on either side of a CNV.R
LocalIS.R		LocalIS.R
MedianHicScoreInCNVBlock.R		MedianHicScoreInCNVBlock.R
PlotBiasOfCNV.r		PlotBiasOfCNV.r
PlotTransHicMatrix.R		PlotTransHicMatrix.R
PlotTwoChromosomeHic.R		PlotTwoChromosomeHic.R
Plot_Hi-C_and_epigenetic_peaks_and_expressions.R		Plot_Hi-C_and_epigenetic_peaks_and_expressions.R
RPMI8226, Interactions between TADs on either side of a CNV.R		RPMI8226, Interactions between TADs on either side of a CNV.R
RPMI8226_CNV_block_bias.R		RPMI8226_CNV_block_bias.R
U266_CNV_block_bias.R		U266_CNV_block_bias.R
U266_CNV_boundary_TAD_boundary.R		U266_CNV_boundary_TAD_boundary.R
U266_genome_cnv_40kb.R		U266_genome_cnv_40kb.R
Whole_genome_heatmap_5M.R		Whole_genome_heatmap_5M.R
all_tad_boundaries.R		all_tad_boundaries.R
awk_txt2interactions.sh		awk_txt2interactions.sh
cnv_block_bias.R		cnv_block_bias.R
compare_genome_cnv_and_hic_cnv_in_hori_figure.R		compare_genome_cnv_and_hic_cnv_in_hori_figure.R
compare_genome_cnv_and_hic_cnv_in_single_figure.R		compare_genome_cnv_and_hic_cnv_in_single_figure.R
compartments_genes.R		compartments_genes.R
epi_peaks_analysis.R		epi_peaks_analysis.R
example_of_CombineTwoChromosomes.R		example_of_CombineTwoChromosomes.R
example_of_PlotTwoChromosomeHic.R		example_of_PlotTwoChromosomeHic.R
findGene.R		findGene.R
generate_whole_genome_heatmaps.R		generate_whole_genome_heatmaps.R
getHicScore.R		getHicScore.R
getLocalHeatmap_test.R		getLocalHeatmap_test.R
getScore.R		getScore.R
insulation_score_and_gene_expression.R		insulation_score_and_gene_expression.R
nearestTADDistance.R		nearestTADDistance.R
permutate_sites_tad_distance.R		permutate_sites_tad_distance.R
permutate_sites_tad_distance_U266.R		permutate_sites_tad_distance_U266.R
plotMultipleData.R		plotMultipleData.R
plotMultipleData2.R		plotMultipleData2.R
readme.txt		readme.txt
rect_heatmap.R		rect_heatmap.R
test_tri_heatmap_and_rect_heatmap.R		test_tri_heatmap_and_rect_heatmap.R
the relationship between TADs and AB.R		the relationship between TADs and AB.R
tri_heatmap.r		tri_heatmap.r

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3D genome of multiple myeloma

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