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Covert Lab

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Shriram Center, Stanford University, Stanford CA 94305
http://covert.stanford.edu

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WholeCellEcoliRelease WholeCellEcoliRelease Public

Release of the whole cell E. coli model.

Python 57 14

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Showing 10 of 30 repositories

wcEcoli Public
Whole Cell Model of E. coli

Python 17 3 150 1 Updated May 2, 2024
vivarium-ecoli Public
Whole cell model of E. coli implemented with Vivarium

Jupyter Notebook 10 MIT 3 8 1 Updated May 1, 2024
orjson Public Forked from ijl/orjson
Fast, correct Python JSON library supporting dataclasses, datetimes, and numpy

Python 0 Apache-2.0 198 0 0 Updated Apr 18, 2024
short-gene-alignment Public

Python 0 0 0 0 Updated Feb 28, 2024
Rend-seq-plots Public

Jupyter Notebook 0 1 0 0 Updated Feb 28, 2024
arrow Public
Stochastic simulations in python

Python 3 MIT 1 17 1 Updated Jun 30, 2023
borealis Public
Run FireWorks workflows in Google Cloud.

Python 4 MIT 1 1 3 Updated Jun 6, 2023
WholeCellEcoliRelease Public
Release of the whole cell E. coli model.

Python 57 14 0 6 Updated Apr 24, 2023
wcecoli-colony-analysis Public
Code and analysis for the "Whole-Colony Modeling of Escherichia coli" that is currently in preparation.

Python 0 GPL-3.0 0 0 0 Updated Aug 23, 2022
covert-scope-jobs Public

Python 0 0 0 0 Updated Jul 1, 2021

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