Pinned

1. pipeline-v5 pipeline-v5 Public

   This repository contains all CWL descriptions of the MGnify pipeline version 5.0.

   HTML 20 18

2. emg-viral-pipeline emg-viral-pipeline Public

   VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies

   Python 107 13

3. genomes-pipeline genomes-pipeline Public

   MGnify genome analysis pipeline

   Python 89 21

4. mgnify-web mgnify-web Public

   Parent repo for MGnify's (EMBL-EBI's metagenomics platform) API and web client. Designed for local development.

   Python 5

5. notebooks notebooks Public

   MGnify documentation and Jupyter Lab notebooks to support downstream analysis of MGnify data (EMBL-EBI's metagenomics platform)

   Jupyter Notebook 10 7

6. genome_uploader genome_uploader Public

   Python script to upload bins and MAGs to ENA (European Nucleotide Archive)

   Python 20 3