2.31.1 (2024-05-01)
- faq: Replace FastANI with Skani. (0c458a1)
2.31.0 (2024-04-29)
- banner: Remove outage banner. (ac046f0)
- umami: Remove umami analytics. (98cfd11)
2.30.0 (2024-04-25)
- R220: Add outage banner. (4d5e82c)
2.29.0 (2024-04-23)
- R220: Update the website for R220. (676fa6b)
- R220: Update the website for R220. (e47c15d)
- R220: Update the website for R220. (08b7ddb)
- R220: Update the website for R220. (b89e13d)
- R220: Update the website for R220. (22c40e3)
2.28.0 (2024-03-10)
- fastani: Fix tooltip positioning for heatmap. (95e2e6e)
- fastani: Add new query button. (b999989)
2.27.0 (2024-03-06)
- fastani: Re-enable FastANI calculator. (3e0e6a5)
2.26.1 (2023-12-15)
- fastani: Add message to explain FastANI unavailable. (b81f8b0)
2.26.0 (2023-12-15)
- faq/methods: Add RED to methods and FAQ, and taxon submission info to FAQ. (d76c440)
2.25.0 (2023-09-28)
- FastANI: Reduce maximum number of FastANI jobs to 5000. (8f737f9)
- licenses: Add information page on the licenses used. (2114424)
- twitter: Add twitter footer to main page (814b49c)
- twitter: Add twitter footer to main page (ee49dd6)
- downloads: Undo downloads deletion. (66a7b0a)
2.24.5 (2023-07-06)
- twitter: Remove twitter timeline from website. (ff7abbd)
2.24.4 (2023-06-12)
- index: Add R214.1 link to main page. (79eb94a)
2.24.3 (2023-05-26)
- genome: Fix lat/long displaying for molecule count. (717fa4c)
2.24.2 (2023-05-17)
- genome: Genome would appear as N/A if opened in a new tab. (3c85cec)
2.24.1 (2023-05-15)
- about: Update link for SAB. (5462d5d)
2.24.0 (2023-05-11)
- about: Add GTDB scientific advisory board (4c50e73)
- about: Advisory board formatting (9d37eb3)
- about: Advisory board formatting (c2b3121)
- about: Advisory board formatting (c2fcf17)
- about: Advisory board formatting (06e317e)
- about: Advisory board formatting (1d23539)
2.23.0 (2023-05-10)
- R214: Updated main page to include the GTDB-Tk R214 banner. (a83efcc)
2.22.0 (2023-04-28)
- genome: Remove duplicated tooltip for taxonomic information. (c16ad58)
- plausible: Make sure FastANI email is defined and has content. (f636283)
- R214: Add date of release. (bf5fa2a)
- R214: Fix incorrect number of species. (dfe91fd)
- R214: GTDB R214 stats page - hide RED until ready. (db34121)
- R214: Update link to taxon history to default to R214. (a5318e1)
- genome: Add bold hover to genome page links. (6facb06)
- genome: Add bold hover to genome page links. (5652e8d)
- genome: Add tooltip for taxonomic information. (e0af1fb)
- R214: Add additional information to the comparison of GTDB and NCBI taxa. (719a413)
- R214: Add interactive RED plot. (520eef5)
- R214: Add Tk notice banner. (8da47ec)
- R214: GTDB R214 add counts to index page. (14ddcb8)
- R214: GTDB R214 preview. (ee74a9f)
- R214: GTDB R214 stats page. (bd89199)
- R214: Update NCBI taxonomy browser links to data-hub. (5008939)
2.21.0 (2023-04-14)
- tree: Add margin to NCBI external resource button. (b8e4f4f)
2.20.2 (2023-04-07)
- plausible: Remove outbound link tracking to fix links not opening in new tab. (d263c49)
2.20.1 (2023-04-05)
- tree: Automatically open descendant nodes if they are of length 1. (eb5d22e)
2.20.0 (2023-04-04)
- tree: Add LPSN url to nodes. (f4e9ef3)
- tree: Add LPSN url to nodes. (65ce063)
- tree: Add NCBI url to nodes. (fca4556)
2.19.0 (2023-04-03)
- fastani: Add method to find previous jobs. (7178db0)
2.18.0 (2023-04-02)
- fastani: Add option to have results e-mailed to user. (3bcb408)
2.17.0 (2023-03-28)
- about: Broken ecogenomics.org links now redirect to SCMB/google scholar. (f696eb9)
- tree: Track show Bergey's Manual clicks. (44d9af6)
2.16.0 (2023-03-28)
- fastani: Add low priority and fix table sorting. (80070f4)
- fastani: Add modal to set priority queue secret. (6122bd1)
2.15.0 (2023-03-26)
- advanced: Fix margin issues for the download genome button. (3817017)
- advanced: Re-run query when route changes. (272ef7e)
- browsers: Disable download buttons when there are no rows. (cbdaa7b)
- browsers: Update table filters based on forward/backwards navigation. (35b00fa)
- searches: Disable download when no rows are available. (6d18ef3)
- searches: Disable results from previous releases when no data are available. (8347d6e)
- previous-releases: Add pagination to the previous releases modal. (785c6fa)
2.14.1 (2023-03-22)
- api: Parameterise query string for taxon API call. (d64f046)
- cache: Add API version instead of time as cache key. (9491be7)
- tree: Update Bergey's Manual icon. (324a53d)
2.14.0 (2023-03-20)
- seo: Add canonical tags to dynamic pages. (e07331b)
- seo: Add convert-accessions page to robots.txt (077894f)
- seo: Add meta tags and keywords for SEO. (a4e64d1)
- seo: Update keywords. (1a7fa57)
- twitter: Fix skeleton loader of twitter timeline. (071e39f)
- 404: Add static 404 page. (55cbe1f)
2.13.0 (2023-03-19)
- cache: Add cache key to all API calls. (4d07687)
2.12.0 (2023-03-17)
- advanced: Add button to download genomes from advanced search. (b5a1d89)
2.11.2 (2023-03-17)
- headers: Disallow indexing of webpack files. (453e43e)
- indexing: Allow indexing of browsers page. (357340a)
- taxsearch: Add redirect for broken URL /taxsearch (8b26740)
- taxsearch: Add redirect for broken URL /taxsearch (bbde5b8)
- cache: Update cache rules. (56bcbdd)
2.11.1 (2023-03-15)
- robots.txt: Remove tree page from disallow list. (fc84711)
2.11.0 (2023-03-01)
- semantic-release: Update version and webhook for publishing. (f0b70c4)
- semantic-release: Update version and webhook for publishing. (16ef216)
- semantic-release: Update version and webhook for publishing. (3d8afc7)
2.10.0 (2023-02-24)
- api: Add API timeout catch blocks. (c9c9322)
- ncbi: Update NCBI links to data-hub page. (a874c9d)
- sitemap: Read from API sitemap endpoint on generation. (e012d9a)
- tree: Add bergeys URL to tree. (7338feb)
2.9.0 (2023-02-14)
- notify: Remove outage notification. (1c32bd6)
2.8.0 (2023-01-30)
- plausible: Add plausible analytics. (bdee130)
- plausible: Add plausible analytics. (23a8e9f)
- plausible: Add plausible analytics. (31f5560)
2.7.0 (2023-01-26)
- banner: Add maintenance window banner. (5bc4bdb)
- banner: Add maintenance window banner. (26b897f)
- banner: Add maintenance window banner. (a52ea39)
2.6.2 (2023-01-03)
- tree: Fix a bug where medium sized breakpoints would not show the tree sidebar. (0f9946f)
2.6.1 (2022-12-09)
- faq: Fix long titles not wrapping on words, show full FAQ title in nav bar. (1eb04c5)
2.6.0 (2022-12-09)
- faq: Remove duplication in why-are-some-genus-names-formed-from-a-strain-identifier (d468e8e)
- about: Add funding information for FT170100213. (72ab3af)
- faq: Add why-do-some-names-not-appear-in-the-gtdb-taxonomy (ab29ae6)
- tools: Add sourmash as a 3rd party tool. (5e5444e)
- tree: Add Bergey's Manual links. (680c215)
- tree: Add Bergey's Manual links. (39cf210)
- tree: Add SeqCode links. (e1035cd)
- tree: Update /tree to contain an icon to Bergey's Manual and SeqCode. (bc9da44)
2.5.0 (2022-11-01)
- tree: Show counts in mobile view. (20b2ee0)
- methods: Add multiple sequence alignment information to methods. (fbc16d4)
2.4.0 (2022-10-28)
- survey: Partial searches for an accession to trigger surveillance genome warning. (9bafef3)
2.3.0 (2022-10-11)
- GTDB-Tk v2: Add the GTDB-Tk v2 manuscript and citation link. (c3ca45b)
2.2.2 (2022-09-16)
- twitter: Update twitter timeline to fill max space. (d517f54)
2.2.1 (2022-08-21)
- genome: Removed "GTDB" from "GTDB Type Material Designation". (f7dba40)
- index: Temporary fix to set maximum height for twitter feed. (5ed8ef3)
- tree-accessions: Remove timeout period. (6c4a995)
2.2.0 (2022-06-10)
- fastani: Add heatmap to FastANI calculator. (7b10057)
- fastani: Update heatmap styling and add progress bar. (edf9245)
2.1.1 (2022-05-06)
- fastani: Include CMD in logs. (819028e)
2.1.0 (2022-05-06)
- cookie banner: Set banner to hide by default. (9ac186f)
- fastani: Move logs outside expandable rows, don't group qvr and rvq. (21b2235)
- gdpr: Add cookie consent banner. (0fbf51a)
- stats: Add release date to stats page. (77e9f86)
- stats: Add release date to stats page. (4267dd5)
- cookie banner: Temporarily hide until bootstrap works. (f47a8de)
2.0.0 (2022-04-08)
- faq: Update FAQ to reference AR53 marker set. (9c52ae6)
- r202 stats: Fixed an issue where the double plots were showing. (7babc86)
- stats: Fit stats within margin and add interactivity. (3264cd9)
- stats: Interactive RED plots now are within margins and display Order plus count on Y axis. (6d8eb78)
- faq: Add FAQ for Shigella species. (2f1f71b)
- methods: Update reference to AR53 instead of AR122. (7bd5b93)
- R207: Update for R207. (d8366ec)
- R207: R207 taxonomy
1.2.0 (2022-03-18)
- tree: Limit the number of genomes displayed under a single species to 100. (8d3b57a)
1.1.0 (2022-03-11)
- about: Added API and website version to about page. (f33ecad)
- about: Updated about text. (4397e40)
- about: Updated the about page to contain more up-to-date information. (ad3f878)
- attributions: Added ARDC/QCIF. (95ca307)
- navigation: Added external Status page link. (b9a395c)
- nuxt: Added .nuxtignore file to ignore external files triggering rebuild. (58b4437)
- tools/fastani: Added cmd to FastANI info modal. (f8c44c4)
- tools/fastani: Removed autorefresh on FastANI calculator until fixed. (d0e0545)
- init: Initial release. (aea8024)