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GATB

Genome Analysis Toolbox with de-Bruijn graph

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  1. bcalm bcalm Public

    compacted de Bruijn graph construction in low memory

    Python 96 19

  2. minia minia Public

    Minia is a short-read assembler based on a de Bruijn graph

    C++ 69 12

  3. gatb-core gatb-core Public

    Core library of the Genome Analysis Toolbox with de-Bruijn graph

    C++ 62 25

  4. simka simka Public

    Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.

    C++ 44 10

  5. dsk dsk Public

    k-mer counting software

    Shell 37 9

  6. DiscoSnp DiscoSnp Public

    DiscoSnp is designed for discovering all kinds of SNPs (not only isolated ones), as well as insertions and deletions, from raw set(s) of reads.

    Python 35 20

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