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| Original file line number | Diff line number | Diff line change |
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| --- | ||
| title: v2.11.0 Release | ||
| date: 2024-04-16 21:10:39 | ||
| tags: ['release', 'jbrowse 2'] | ||
| --- | ||
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| This release adds a new option "Color by CDS" to color the reference sequence | ||
| track and CDS features in gene tracks by their reading frame | ||
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|  | ||
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| Screenshot showing the "Color by CDS" setting on the linear genome view menu | ||
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| This release also adds new Hi-C coloring options, including a log-scale mode | ||
| that enhances visible patterns | ||
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| There are also many other small fixes including the ability to highlight | ||
| multiple regions from the URL bar &highlight= option, faster zooming with the | ||
| zoom in/out buttons, and more | ||
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| See release notes for details | ||
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| ## Downloads | ||
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| - [v2.11.0](https://github.com/GMOD/jbrowse-components/releases/tag/v2.11.0) | ||
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| To install JBrowse 2 for the web, you can download the link above, or you can | ||
| use the JBrowse CLI to automatically download the latest version. See the | ||
| [JBrowse web quick start](https://jbrowse.org/jb2/docs/quickstart_web) for more | ||
| details. | ||
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| yarn run v1.22.19 $ lerna-changelog --silent --silent --next-version 2.11.0 | ||
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| ## 2.11.0 (2024-04-16) | ||
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| #### :rocket: Enhancement | ||
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| - `core` | ||
| - [#4341](https://github.com/GMOD/jbrowse-components/pull/4341) Improve error | ||
| dialog stack trace display and fix usage on https sites | ||
| ([@cmdcolin](https://github.com/cmdcolin)) | ||
| - [#4340](https://github.com/GMOD/jbrowse-components/pull/4340) Change email | ||
| on error message dialog ([@cmdcolin](https://github.com/cmdcolin)) | ||
| - [#4288](https://github.com/GMOD/jbrowse-components/pull/4288) Create | ||
| GCContentTrack type ([@cmdcolin](https://github.com/cmdcolin)) | ||
| - [#4312](https://github.com/GMOD/jbrowse-components/pull/4312) Update | ||
| @mui/x-data-grid 6->7 ([@cmdcolin](https://github.com/cmdcolin)) | ||
| - [#4280](https://github.com/GMOD/jbrowse-components/pull/4280) Add JSON.parse | ||
| utility to the "jexl function library" | ||
| ([@cmdcolin](https://github.com/cmdcolin)) | ||
| - [#4276](https://github.com/GMOD/jbrowse-components/pull/4276) Add retry | ||
| method to share link dialog in case of error | ||
| ([@cmdcolin](https://github.com/cmdcolin)) | ||
| - [#4266](https://github.com/GMOD/jbrowse-components/pull/4266) Add bookmark | ||
| highlight to overview scale bar | ||
| ([@carolinebridge-oicr](https://github.com/carolinebridge-oicr)) | ||
| - Other | ||
| - [#4335](https://github.com/GMOD/jbrowse-components/pull/4335) Add ability to | ||
| create multiple highlights on the linear genome view | ||
| ([@carolinebridge-oicr](https://github.com/carolinebridge-oicr)) | ||
| - [#4287](https://github.com/GMOD/jbrowse-components/pull/4287) Fix snap | ||
| package and also add deb package ([@cmdcolin](https://github.com/cmdcolin)) | ||
| - [#4034](https://github.com/GMOD/jbrowse-components/pull/4034) Subtler | ||
| minicontrols focus ([@cmdcolin](https://github.com/cmdcolin)) | ||
| - `app-core`, `product-core` | ||
| - [#4337](https://github.com/GMOD/jbrowse-components/pull/4337) Allow moving | ||
| tracks and views up/down/to top/to bottom, and better click and drag track | ||
| re-ordering ([@cmdcolin](https://github.com/cmdcolin)) | ||
| - `core`, `product-core` | ||
| - [#4336](https://github.com/GMOD/jbrowse-components/pull/4336) Add new Hi-C | ||
| color schemes with log scale mode ([@cmdcolin](https://github.com/cmdcolin)) | ||
| - `core`, `web-core` | ||
| - [#4284](https://github.com/GMOD/jbrowse-components/pull/4284) Allow getting | ||
| stack trace error dialog from session.notify errors | ||
| ([@cmdcolin](https://github.com/cmdcolin)) | ||
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| #### :bug: Bug Fix | ||
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| - Other | ||
| - [#4318](https://github.com/GMOD/jbrowse-components/pull/4318) Use | ||
| node-fetch-native to fix warning from JBrowse CLI on node 21+ | ||
| ([@cmdcolin](https://github.com/cmdcolin)) | ||
| - [#4319](https://github.com/GMOD/jbrowse-components/pull/4319) Fix Hi-C | ||
| rendering for some high resolution files | ||
| ([@cmdcolin](https://github.com/cmdcolin)) | ||
| - [#4314](https://github.com/GMOD/jbrowse-components/pull/4314) Fix loading of | ||
| BED12 data from a plaintext BED with column headers | ||
| ([@cmdcolin](https://github.com/cmdcolin)) | ||
| - [#4293](https://github.com/GMOD/jbrowse-components/pull/4293) Fix alignment | ||
| curves showing up in inkscape for breakpoint svg | ||
| ([@cmdcolin](https://github.com/cmdcolin)) | ||
| - [#4287](https://github.com/GMOD/jbrowse-components/pull/4287) Fix snap | ||
| package and also add deb package ([@cmdcolin](https://github.com/cmdcolin)) | ||
| - [#4277](https://github.com/GMOD/jbrowse-components/pull/4277) Fix usage of | ||
| --assemblyNames in `jbrowse add-connection` | ||
| ([@cmdcolin](https://github.com/cmdcolin)) | ||
| - [#4275](https://github.com/GMOD/jbrowse-components/pull/4275) Fixes bug on | ||
| URL highlight param in which refName aliases were not working | ||
| ([@carolinebridge-oicr](https://github.com/carolinebridge-oicr)) | ||
| - `text-indexing` | ||
| - [#4269](https://github.com/GMOD/jbrowse-components/pull/4269) Avoid crash on | ||
| badly encoded GFF attributes ([@cmdcolin](https://github.com/cmdcolin)) | ||
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| #### Committers: 3 | ||
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| - Caroline Bridge | ||
| ([@carolinebridge-oicr](https://github.com/carolinebridge-oicr)) | ||
| - Colin Diesh ([@cmdcolin](https://github.com/cmdcolin)) | ||
| - Garrett Stevens ([@garrettjstevens](https://github.com/garrettjstevens)) Done | ||
| in 1.85s. |
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