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Release 0.12.10 #598

Merged
merged 6 commits into from
May 9, 2023
Merged

Release 0.12.10 #598

merged 6 commits into from
May 9, 2023

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yannikschaelte
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@yannikschaelte yannikschaelte commented Mar 3, 2023

General:

  • Update to Python 3.11, drop Python 3.8 support
  • Turn simple files into submodules for cleaner import
  • Fix dask sampler (change default pickling and use global function that it can pickle)

Documentation:

  • Configure readthedocs build environment
  • Refactor API docs (add [+]; easier navigation)
  • Correct scipy intersphinx link
  • Add docstrings to submodules

Minor fixes:

  • Flake8 fixes of dict creation from key+value
  • Fix imports from correct submodule in external submodule
  • Fix package versions in migration test

Visualization:

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codecov-commenter commented Mar 3, 2023

Codecov Report

Merging #598 (99c0b86) into main (7d9c109) will decrease coverage by 0.11%.
The diff coverage is 96.66%.

📣 This organization is not using Codecov’s GitHub App Integration. We recommend you install it so Codecov can continue to function properly for your repositories. Learn more

@@            Coverage Diff             @@
##             main     #598      +/-   ##
==========================================
- Coverage   86.85%   86.75%   -0.11%     
==========================================
  Files         129      139      +10     
  Lines        7852     7941      +89     
==========================================
+ Hits         6820     6889      +69     
- Misses       1032     1052      +20     
Impacted Files Coverage Δ
pyabc/__init__.py 100.00% <ø> (ø)
pyabc/distance/pnorm.py 85.97% <ø> (ø)
pyabc/external/__init__.py 100.00% <ø> (ø)
pyabc/external/julia/__init__.py 100.00% <ø> (ø)
pyabc/external/r/__init__.py 100.00% <ø> (ø)
pyabc/parameters/parameters.py 84.21% <ø> (ø)
pyabc/petab/amici.py 81.48% <0.00%> (ø)
pyabc/random_choice/random_choice.py 100.00% <ø> (ø)
pyabc/sampler/__init__.py 100.00% <ø> (ø)
pyabc/sampler/dask_sampler.py 83.33% <ø> (-16.67%) ⬇️
... and 32 more

... and 2 files with indirect coverage changes

yannikschaelte and others added 4 commits April 23, 2023 18:07
* fix C416 unnecessary dict comprehension

* bump rtd python version

* update migration test

* fix .rtd file

* ensure jquery installed for [+] in docs

* ignore warnings

* refactor api docs

* fix typo

* update to py3.11

* fox

* extend migration time

* fix dask by global function; fix sqlalchemy update

* update migrate test with fixed versions

* fix visserver weird wrong rename
@yannikschaelte yannikschaelte merged commit 5508549 into main May 9, 2023
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2 participants