lave /lāv/

A collection of functions in R for genomic tinkering, processing, and plotting. John Urban (2014-2020)

If you find these tools useful for your own work, please cite the fungus fly genome preprint:

Urban JM, Foulk MS, Bliss JE, Coleman CM, Lu N, Mazloom R, Brown SJ, Spradling AC, Gerbi SA. 2020.

Single-molecule sequencing of long DNA molecules allows high contiguity de novo genome assembly for the fungus fly, Sciara coprophila.

bioRxiv 2020.02.24.963009.

https://www.biorxiv.org/content/10.1101/2020.02.24.963009v1

This paper contains the first descriptions of SciaraTools, Fast5Tools, and Battery.