GitHub - Jonikas-Lab/mutant-pools: Mutant pool deepseq data generation/analysis/plotting/simulation/etc and related programs.

Name		Name	Last commit message	Last commit date
Latest commit History 563 Commits
test_data		test_data
test_data_v0		test_data_v0
gff_examine_file.py		gff_examine_file.py
growth_rate_calculation_snippets.txt		growth_rate_calculation_snippets.txt
make_joint_growthrates.py		make_joint_growthrates.py
mutant_Carette.py		mutant_Carette.py
mutant_IB_RISCC_classes.py		mutant_IB_RISCC_classes.py
mutant_analysis_classes.py		mutant_analysis_classes.py
mutant_count_alignments.py		mutant_count_alignments.py
mutant_count_aln_IB+RISCC.py		mutant_count_aln_IB+RISCC.py
mutant_flanking_region_tools.py		mutant_flanking_region_tools.py
mutant_growth_rates.py		mutant_growth_rates.py
mutant_join_datasets.py		mutant_join_datasets.py
mutant_make_plots.py		mutant_make_plots.py
mutant_plotting_utilities.py		mutant_plotting_utilities.py
mutant_screen_statistics.py		mutant_screen_statistics.py
mutant_simulations.py		mutant_simulations.py
mutant_utilities.py		mutant_utilities.py
notes_on_GFF_parsing.txt		notes_on_GFF_parsing.txt
parse_annotation_file.py		parse_annotation_file.py
plot_mutants_along_chromosome_snippets.txt		plot_mutants_along_chromosome_snippets.txt