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@MetabolicEngineeringGroupCBMA

Metabolic Engineering Group at CBMA

This are repositories related to the MEC group at CBMA

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  1. ypk-xylose-pathways ypk-xylose-pathways Public

    Pereira, F., Azevedo, F., Parachin, N. S., Hahn-Hägerdal, B., Gorwa-Grauslund, M. F., & Johansson, B. (2016). Yeast Pathway Kit: A Method for Metabolic Pathway Assembly with Automatically Simulated…

    HTML 1 1

  2. Cunha_et_al_2017 Cunha_et_al_2017 Public

    Costa, C. E., Romaní, A., Cunha, J. T., Johansson, B., & Domingues, L. (2017). Integrated approach for selecting efficient Saccharomyces cerevisiae for industrial lignocellulosic fermentations: Imp…

    HTML 1

  3. dDEL dDEL Public

    Silva, P. C., Domingues, L., Collins, T., Oliveira, R., & Johansson, B. (2018). Quantitative assessment of DNA damage in the industrial ethanol production strain Saccharomyces cerevisiae PE-2. FEMS…

    Jupyter Notebook

  4. Silva_et_al_2020 Silva_et_al_2020 Public

    Silva, Paulo César, Javier A. Ceja-Navarro, Flávio Azevedo, Ulas Karaoz, Eoin L. Brodie, and Björn Johansson. 2021. “A Novel D-Xylose Isomerase from the Gut of the Wood Feeding Beetle Odontotaenius…

    HTML

  5. pydna-examples pydna-examples Public

    Jupyter notebooks and data files that demonstrates how pydna can be used to simulate and document cloning.

    HTML 3

  6. pydna_template pydna_template Public template

    This is a template repository for a pydna documentation and simulation project.

    Jupyter Notebook 1

Repositories

Showing 10 of 18 repositories
  • ypk-xylose-pathways Public

    Pereira, F., Azevedo, F., Parachin, N. S., Hahn-Hägerdal, B., Gorwa-Grauslund, M. F., & Johansson, B. (2016). Yeast Pathway Kit: A Method for Metabolic Pathway Assembly with Automatically Simulated Executable Documentation. ACS Synthetic Biology, 5(5), 386–394.

    HTML 1 BSD-3-Clause 1 0 0 Updated Apr 8, 2024
  • pydna-examples Public

    Jupyter notebooks and data files that demonstrates how pydna can be used to simulate and document cloning.

    HTML 3 BSD-3-Clause 0 0 0 Updated Mar 5, 2024
  • MetabolicEngineeringGroupCBMA.github.io Public

    This is our group wiki.

    0 0 0 0 Updated Jan 30, 2024
  • old_site Public

    This is our group website https://metabolicengineeringgroupcbma.github.io/

    1 0 0 0 Updated Jan 27, 2024
  • YeastPathwayKit Public

    Yeast pathway kit promoter and terminator vectors and other related public information. Do not put secret information here.

    Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated Sep 28, 2023
  • Pozdniakova_et_al_2023 Public

    Supplementary data for Pozdniakova 2023

    Jupyter Notebook 0 0 0 0 Updated Jun 22, 2023
  • Silva_et_al_2022 Public
    Jupyter Notebook 0 0 0 0 Updated Nov 9, 2022
  • pydna_template Public template

    This is a template repository for a pydna documentation and simulation project.

    Jupyter Notebook 1 0 0 0 Updated Nov 9, 2022
  • Pereira_et_al_2022 Public

    Pereira, Humberto, Flávio Azevedo, Lucília Domingues, and Björn Johansson. 2022. “Expression of Yarrowia Lipolytica Acetyl-CoA Carboxylase in Saccharomyces Cerevisiae and Its Effect on in-Vivo Accumulation of Malonyl-CoA.” *Computational and Structural Biotechnology Journal* 20 (January 1): 779–787.

    Jupyter Notebook 0 0 0 0 Updated Oct 30, 2022
  • Silva_et_al_2020 Public

    Silva, Paulo César, Javier A. Ceja-Navarro, Flávio Azevedo, Ulas Karaoz, Eoin L. Brodie, and Björn Johansson. 2021. “A Novel D-Xylose Isomerase from the Gut of the Wood Feeding Beetle Odontotaenius Disjunctus Efficiently Expressed in Saccharomyces Cerevisiae.” *Scientific Reports* 11 (1) (February 26): 4766.

    HTML 0 BSD-3-Clause 0 0 0 Updated Oct 30, 2022
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