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@MoseleyBioinformaticsLab

Moseley Bioinformatics and Systems Biology Lab

We develop and maintain a set of high-quality, well-documented, open source code repositories for general scientific re-use.

Pinned

  1. GOcats GOcats Public

    A tool for categorizing Gene Ontology into subgraphs of user-defined emergent concepts

    Python 7 2

  2. mwtab mwtab Public

    The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for archival of Mass Spectrometry (MS) and Nuclear Magnetic Reson…

    Python 11 2

  3. academic_tracker academic_tracker Public

    Academic Tracker is a package that can search PubMed, Crossref, ORCID, and Google Scholar for publications given a list of authors or publication citations.

    Python 13 5

  4. ICIKendallTau ICIKendallTau Public

    Information-Content-Informed Kendall-tau in R

    R 6 1

  5. kegg_pull kegg_pull Public

    Package that facilitates pulling database entries from KEGG via its REST API

    Python 8 1

  6. MESSES MESSES Public

    MESSES (Metadata from Experimental SpreadSheets Extraction System) is a Python package that facilitates the conversion of tabular data into other formats.

    Python

Repositories

Showing 10 of 40 repositories
  • mwFileStatusWebsite Public

    Repository hosting the Metabolomics Workbench File Status Website. A Third party website containing file status and validation information for all publicly available MW analysis data files.

    HTML 4 BSD-3-Clause-Clear 0 0 0 Updated May 5, 2024
  • categoryCompare2 Public

    Enables Gene Ontology (and other feature annotation) enrichment calculations and comparisons between feature sets.

    R 1 1 19 0 Updated May 2, 2024
  • gpu_tracker Public

    Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage.

    Python 4 1 9 2 Updated May 1, 2024
  • mwtab Public

    The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for archival of Mass Spectrometry (MS) and Nuclear Magnetic Resonance (NMR) experimental data.

    Python 11 BSD-3-Clause-Clear 2 6 0 Updated Apr 25, 2024
  • ICIKendallTau Public

    Information-Content-Informed Kendall-tau in R

    R 6 1 7 1 Updated Apr 12, 2024
  • moseleybioinformaticslab.r-universe.dev Public

    maintaining the information for r-universe

    0 0 0 0 Updated Apr 10, 2024
  • visualizationQualityControl Public

    Visualization methods for omics dataset quality control

    R 9 5 8 0 Updated Apr 8, 2024
  • MESSES Public

    MESSES (Metadata from Experimental SpreadSheets Extraction System) is a Python package that facilitates the conversion of tabular data into other formats.

    Python 0 0 5 0 Updated Apr 5, 2024
  • icikt Public
    Python 0 0 3 1 Updated Apr 2, 2024
  • ScanCentricPeakCharacterization Public

    R package for scan-centric, frequency based peak characterization of mass spectrometry

    R 0 0 13 0 Updated Mar 28, 2024
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