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@NAMlab

NAMlab

Network Analysis and Modelling Lab at the Leibniz Institute of Plant Genetics and Crop Plant Research

Popular repositories

  1. PlantEd PlantEd Public

    RTS Simulation, Plant Survival Game

    Python 4 1

  2. DeepCRE DeepCRE Public

    Deep learning the cis-regulatory code for gene expression in selected model plants

    R 3

  3. kILBIL kILBIL Public

    Custom code used in the manuscript:

    R 2 2

  4. IPK_R_courses IPK_R_courses Public

    IPK R courses, tutorials etc.

  5. 19_mlcb 19_mlcb Public

    Forked from jbkinney/19_mlcb

    Code for Tareen & Kinney (MLCB 2019) https://doi.org/10.1101/835942

    Jupyter Notebook

  6. fastqc fastqc Public

    Forked from csf-ngs/fastqc

    csf fork of fastqc for usage on selected reads of unaligned bam file

    Java

Repositories

Showing 10 of 21 repositories
  • tomato-rna-meta Public

    Data, code, and results for our paper Identification of core, conditional and crosstalk components of tomato heat stress response using integrative transcriptomics and orthology (DOI coming). If you use any of our code or results in a scientific publication, we would be grateful if you cite the paper.

    R 0 GPL-3.0 0 0 0 Updated Apr 30, 2024
  • rnaseq-mapper Public
    Nextflow 0 1 0 0 Updated Apr 25, 2024
  • PlantEd Public

    RTS Simulation, Plant Survival Game

    Python 4 GPL-3.0 1 0 0 Updated Apr 23, 2024
  • DeepCRE Public

    Deep learning the cis-regulatory code for gene expression in selected model plants

    R 3 0 0 0 Updated Mar 15, 2024
  • moca_blue Public
    R 0 0 0 0 Updated Mar 13, 2024
  • PlantEd-AI Public

    Reinforcement learning based bots playing the PlantEd game

    Python 0 0 0 0 Updated Feb 25, 2024
  • QBIO Public

    QBIO HHU course materials

    R 0 0 4 0 Updated Oct 31, 2023
  • Aiyesa_Tomato_Differential_Gene_Expression_Analysis Public

    Internship project aimed at identifying and investigating deferentially expressed genes in tomato (S.lycopersicum) using available data on heat stress experiment from online database.

    R 0 0 0 0 Updated May 3, 2022
  • OMA-plant-genomes-proj Public

    For updated plant genome data, and code for quality assesment of protein sequences and gene co-evolution analysis.

    0 0 0 0 Updated Jan 31, 2022
  • Abul-Master-Thesis Public Forked from zitunstu24/GeneExpressionProfiling

    Co-expression and Co-evolution profiles of heat responsive genes in Tomato

    R 0 1 0 0 Updated Dec 14, 2021
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