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@NTBEL

Nano-Thermal Bioengineering Laboratory at UT Dallas

Pinned

  1. DIAMOND DIAMOND Public

    DIAMOND signal analysis

    MATLAB

  2. PARM PARM Public

    PAR2 Activation and calcium signaling Reaction Model in PySB

    Python

  3. diffusion-fit diffusion-fit Public

    Extract estimates of dye/peptide diffusion coefficients and loss rates from a time-sequence of fluorescence images.

    Python

  4. extracellular-models extracellular-models Public

    Reaction-diffusion models to simulate the dynamics of fluorescent dyes and peptides in the brain extracellular space implemented using the extracellular simulator in NEURON.

    Python

  5. NP-array-heating-simulator NP-array-heating-simulator Public

  6. pharmacodynamic-response-models pharmacodynamic-response-models Public

    Collection of pharmacodynamic response models, including dose-response, inhibitor-response, and various receptor-response models that can be fit to response data.

    Python 1 1

Repositories

Showing 10 of 14 repositories
  • diffusion-fit Public

    Extract estimates of dye/peptide diffusion coefficients and loss rates from a time-sequence of fluorescence images.

    Python 0 MIT 0 3 0 Updated Apr 26, 2023
  • PARM Public

    PAR2 Activation and calcium signaling Reaction Model in PySB

    Python 0 MIT 0 0 0 Updated Feb 24, 2023
  • peptide-property-app Public

    Used peptides.py to predict peptide properties from the amino acid sequence.

    Python 0 MIT 1 0 0 Updated Feb 21, 2023
  • parm-streamlit-app Public

    A streamlit app to interact with PARM and test running the model.

    Python 0 MIT 0 0 0 Updated Feb 21, 2023
  • extracellular-models Public

    Reaction-diffusion models to simulate the dynamics of fluorescent dyes and peptides in the brain extracellular space implemented using the extracellular simulator in NEURON.

    Python 0 MIT 0 0 0 Updated Jan 19, 2023
  • lammps_output_analysis Public

    Python tools to parse, post-process, and analyze outputs from LAMMPS commands.

    Jupyter Notebook 0 MIT 1 2 0 Updated Dec 7, 2022
  • aunp-fragmentation-model-and-fitting Public archive

    Fragmentation distribution fitting and model analysis for our paper Kang et al. J. Phys. Chem. C 2021, 125, 48, 26718–26730

    Jupyter Notebook 0 MIT 0 0 0 Updated Nov 9, 2022
  • ecs-image-to-mcell Public
    Makefile 0 MIT 0 0 0 Updated Nov 3, 2022
  • roi-plotter Public

    A streamlit app to read cell ROI data from csv files and plot the fluorescence traces.

    Python 0 MIT 1 0 0 Updated Oct 18, 2022
  • pharmacodynamic-response-models Public

    Collection of pharmacodynamic response models, including dose-response, inhibitor-response, and various receptor-response models that can be fit to response data.

    Python 1 MIT 1 0 0 Updated Mar 30, 2022
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