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NX4

An alternative to genomic large genomic alignments

Description

NX4 is a web-based visualization tool for the exploration of aligned viral sequences. The tool was born as an alternative to matrix-based MSA visualizations. Please visit the user guide for more information.

Technologies and dependencies

This web application uses a node.js backend to convert the FASTA file into a suitable format for visualization, and ES6 syntax and modules. Major dependencies include:

  • D3 (Data visualization)
  • BioJS (FASTA parsing)
  • Redux (State/event manager)

To explore, extend or use this repo

Download or clone, then cd into the root and install dependencies with npm install.

Also cd into /client and execute npm install.

To run you must run both the backend and the client servers. Execute npm run dev in root and in /client. The client will run in localhost:8080 and the server in localhost:8000

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A web-based viral sequence alignment visualization

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