Updated version in pom.xml

PapenfussLab · Jul 20, 2018 · 58f821f · 58f821f
1 parent 96cfde8
commit 58f821f
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Showing 5 changed files with 6 additions and 6 deletions.
diff --git a/docker/DockerFile b/docker/DockerFile
@@ -6,7 +6,7 @@ FROM ubuntu:16.04
 LABEL base.image="biocontainers:latest" 
 LABEL version="1"
 LABEL software="GRIDSS"
-LABEL software.version="1.7.2"
+LABEL software.version="1.8.0"
 LABEL about.summary="Genomic Rearrangement IDentification Software Suite"
 LABEL about.home="https://github.com/PapenfussLab/gridss"
 LABEL about.documentation="https://github.com/PapenfussLab/gridss"
@@ -36,7 +36,7 @@ USER gridss
 
 WORKDIR /home/gridss/
 
-RUN wget https://github.com/PapenfussLab/gridss/releases/download/v1.7.2/gridss-1.7.2-gridss-jar-with-dependencies.jar
+RUN wget https://github.com/PapenfussLab/gridss/releases/download/v1.8.0/gridss-1.8.0-gridss-jar-with-dependencies.jar
 
 WORKDIR /data/
 

diff --git a/example/example_pipeline.sh b/example/example_pipeline.sh
@@ -19,7 +19,7 @@ REFERENCE=~/reference_genomes/human/hg19.fa
 INPUT=pipelined.example.input.bam
 OUTPUT=pipelined.example.sv.vcf
 RAW_GRIDSS_ASSEMBLY=${OUTPUT/.sv.vcf/.gridss.assembly.bam}
-GRIDSS_JAR=~/bin/gridss-1.5.0-SNAPSHOT-jar-with-dependencies.jar
+GRIDSS_JAR=~/bin/gridss-1.8.0-SNAPSHOT-jar-with-dependencies.jar
 GRIDSS_JVM_ARGS="
 	-Dsamjdk.use_async_io_read_samtools=true 
 	-Dsamjdk.use_async_io_write_samtools=true 

diff --git a/example/gridss.sh b/example/gridss.sh
@@ -7,7 +7,7 @@ BLACKLIST=wgEncodeDacMapabilityConsensusExcludable.bed
 REFERENCE=hg19.fa
 OUTPUT=${INPUT/.bam/.sv.vcf}
 ASSEMBLY=${OUTPUT/.sv.vcf/.gridss.assembly.bam}
-GRIDSS_JAR=../target/gridss-1.7.2-gridss-jar-with-dependencies.jar
+GRIDSS_JAR=../target/gridss-1.8.0-gridss-jar-with-dependencies.jar
 
 if [[ ! -f "$INPUT" ]] ; then
 	echo "Missing $INPUT input file."

diff --git a/example/somatic.sh b/example/somatic.sh
@@ -8,7 +8,7 @@ BLACKLIST=wgEncodeDacMapabilityConsensusExcludable.bed
 REFERENCE=~/reference_genomes/human/hg19.fa
 OUTPUT=somatic.sv.vcf
 ASSEMBLY=${OUTPUT/.sv.vcf/.gridss.assembly.bam}
-GRIDSS_JAR=~/bin/gridss-1.3.0-jar-with-dependencies.jar
+GRIDSS_JAR=~/bin/gridss-1.8.0-jar-with-dependencies.jar
 
 if [[ ! -f "$NORMAL" ]] ; then
 	echo "Missing $NORMAL input file."

diff --git a/pom.xml b/pom.xml
@@ -4,7 +4,7 @@
 	<groupId>au.edu.wehi</groupId>
 	<artifactId>gridss</artifactId>
 	<packaging>jar</packaging>
-	<version>1.8.0-gridss-SNAPSHOT</version>
+	<version>1.8.0-gridss</version>
 	<name>gridss</name>
 	<url>https://github.com/PapenfussLab/gridss</url>
 	<properties>