Home
Bianca Sacchi edited this page Feb 9, 2023
·
26 revisions
This wiki serves as the Wright Lab's introduction and reference for wet and dry lab protocols and tips. View the links below and check the sidebar for useful info.
- Read the Rules and Regulations page
- Using the servers: grandiflora, capsicum, ohta, and gustave info
- Git resources: How to use git & GitHub
- Code styleguides: Make sure your code is easy to read and understand
- Using vim and other text editors
outside resources
- Aligning RNA seq data with STAR
- Variant calling with freebayes
- Samtools, Picard, and GATK variant calling pipeline
- Aging LTR insertions
older tools - please consult more recent documentation before using
- Running barraCUDA- use bwa-mem2 instead
- Running hapCUT to obtain putative haplotype blocks
- Wetlab protocols: safety first! Make sure your WHMIS/EHS training is up-to-date
- Qiagen kit Rumex DNA extraction
- Sorbitol-CTAB Rumex DNA extraction
- ESC
- Growth facilities
- Lab
- EEB department
This wiki is currently being updated. Contributions by Tyler Kent, Julia Kreiner, Zoe Humphries, Joanna Rifkin and Bianca Sacchi.