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Spatial constant rate jump #343

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Spatial constant rate jump #343

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Commits on Sep 3, 2023

  1. Create SpatialConstantRateJump.

    @Vilin97
    Vilin97 committed Sep 3, 2023
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  2. Hook up spatial constant rate jumps to RxRates.

    @Vilin97
    Vilin97 committed Sep 3, 2023
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  3. Add constant rate jump support to RxRates and utils.jl.

    @Vilin97
    Vilin97 committed Sep 3, 2023
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  4. Add spatial constant rate jump to one unit test.

    @Vilin97
    Vilin97 committed Sep 3, 2023
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  5. Add RxRates constructor from constant rate jumps only.

    @Vilin97
    Vilin97 committed Sep 3, 2023
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  6. Remove SpatialConstantRateJump. 

    Just use ConstantRateJump with `rate(u,p,t,site)`.
    @Vilin97
    Vilin97 committed Sep 3, 2023
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  7. Remove an include.

    @Vilin97
    Vilin97 committed Sep 3, 2023
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  8. Add spatial ConstantRateJump to ABC test.

    @Vilin97
    Vilin97 committed Sep 3, 2023
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  9. Add constant rate jump problems to the ABC.jl test.

    @Vilin97
    Vilin97 committed Sep 3, 2023
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  10. Add an error message that flattening is not supported for costant rat… 

    …e jumps.
    @Vilin97
    Vilin97 committed Sep 3, 2023
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Commits on Sep 4, 2023

  1. Merge branch 'master' 

    Conflicts:
	src/spatial/reaction_rates.jl
	test/spatial/reaction_rates.jl
    @Vilin97
    Vilin97 committed Sep 4, 2023
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Commits on Sep 9, 2023

  1. Change empty spatial massaction jump to use concrete types.

    @Vilin97
    Vilin97 committed Sep 9, 2023
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Commits on Sep 12, 2023

  1. Fix two typos.

    @Vilin97
    Vilin97 committed Sep 12, 2023
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  2. Merge branch 'master' of https://github.com/SciML/JumpProcesses.jl in… 

    …to spatial-constant-rate-jump-2
    @Vilin97
    Vilin97 committed Sep 12, 2023
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Commits on Sep 14, 2023

  1. Merge branch 'master' of https://github.com/SciML/JumpProcesses.jl in… 

    …to spatial-constant-rate-jump-2
    @Vilin97
    Vilin97 committed Sep 14, 2023
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