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Popular repositories

  1. metagenome_analyses metagenome_analyses Public

    Using IDBA-ud, this is how we assemble metagenomic reads into scaffolds on different projects

    Python 8 8

  2. Methanotroph_rpS3Analyses_SmithWrighton2018 Methanotroph_rpS3Analyses_SmithWrighton2018 Public

    Data and analyses of methanotroph isolates', MAGs', and other metagenomic rpS3 genes performed for the publication by Smith and Wrighton

    R 3

  3. Protpipeliner Protpipeliner Public

    This script combines MUSCLE, GBLOCKS, Prottest and RaxML for an efficient and streamlined method of building trees.

    Python 2 1

  4. metagenome_annotation metagenome_annotation Public

    Python 2 2

  5. Metatranscriptomics Metatranscriptomics Public

    This script takes metatranscriptomic reads, maps them to a fasta file and calculates the FPKM value using cufflinks

    Python 2

  6. 16S-analyses-with-QIIME 16S-analyses-with-QIIME Public

    Python 2