This webapp takes a genome of interest and rapidly searches for publicly-available metagenomes within NCBI's sequence read archive with the mastiff implementation of branchwater. Metadata associated with the metagenome accessions are summarized in interactive tables, plots, and maps.
Please note that this app is currently in development and may not be fully functional or feature-complete.
This app was created by the United States Department of Agriculture - Agricultural Research Service (USDA-ARS). As a work of the United States Government, this software is available under the CC0 1.0 Universal Public Domain Dedication (CC0 1.0)
This app was developed by the USDA Agricultural Research Service, Genomics and Bioinformatics Research Unit group in Gainesville, FL. Code is authored primarily by Suzanne Fleishman and led by Adam Rivers. Check out our other work at https://tinyecology.com.