Popular repositories

1. Host-Pathogen_Network_Analysis Host-Pathogen_Network_Analysis Public

   Project in collaboration with Parisa Hosseinzadeh at the University of Oregon investigating the sub-network of interactions between pathogen and human proteins

   Jupyter Notebook 2

2. Demultiplex Demultiplex Public

   Code for demultiplexing Illumina sequence data

   Python

3. QAA QAA Public

   RNA-seq Quality Assessment

4. Deduper-Zach-Sisson-1 Deduper-Zach-Sisson-1 Public

   Code for removing PCR duplicates from SAM files which can be the result of PCR amplification bias.

   Python

5. Git_test Git_test Public

6. motif-mark motif-mark Public

   Script to visualize motifs on gene sequences

   Python