RShiny geospatial JHU data dashboard, and RShiny SIR toy model for small city epidemic. Virus genetic cladograms made with Bioconductor.
Interactive geographic epidimic dashboard: https://acvanp.shinyapps.io/COVID-19/
Toy predictive model can be found here: https://acvanp.shinyapps.io/A-B-epi-model/
Genetic analysis in Bioconductor inspired by: https://www.sciencemag.org/news/2020/01/mining-coronavirus-genomes-clues-outbreak-s-origins