cellconfluency

dependencies:

python-skimage
python-opencv

usage:

to test/visualize threshold of standard deviation of local brightness

	segment.py -i image.jpg -S threshold -test test.jpg

to calculate confluency

	area.sh -S threshold img1_001.jpg img2_002.jpg ....

to process time lapse experiment

edit area.make, then

	make -f area.make AREA	

See example folder:

• AF-GAMMA: images to be analyzed
• makefiles: location of area.make
• image_proc: output
• segment_thr: standard deviation threshold
• to run:

cd example
rm -rf image_proc segment_thr
cd makefiles
make AREA