Transcription factor binding site (TFBS) discovery

Predict transcription factor binding specificities/sites (TFBS) using binding site motif sequence and 3D DNA structural information.

Name		Name	Last commit message	Last commit date
Latest commit History 157 Commits
.github/ISSUE_TEMPLATE		.github/ISSUE_TEMPLATE
.COMMANDS.txt		.COMMANDS.txt
.gitignore		.gitignore
.pre-commit-config.yaml		.pre-commit-config.yaml
LICENSE.md		LICENSE.md
README.md		README.md
__init__.py		__init__.py
associate_tfbs_gene.py		associate_tfbs_gene.py
build_features.py		build_features.py
create_bkg_seqs.py		create_bkg_seqs.py
cross_validate_model.py		cross_validate_model.py
get_DNA_shapes.R		get_DNA_shapes.R
overlap_plot_R.R		overlap_plot_R.R
predict.py		predict.py
process_blast.sh		process_blast.sh
requirements.txt		requirements.txt
tfbs_distribution.py		tfbs_distribution.py
uri_decoding.sh		uri_decoding.sh
utils.py		utils.py

akshayparopkari/discover_tfbs