Heterogeneous Z Correction

ImageJ plugin to correct intensity attenuation in confocal images heterogeneously.

Notes

• Please use Sphere_Builder.txt to generate a valid region image for testing
• Your region should be painted in a z-stack with one unique integer value per region.
• You need to provide the rational coefficients for each region, including the mounting media.
• Coefficients should be guess from z-stack's intensities drop. They varie according to your objective specs, pinhole size, mounting media and cell's refractive index.

Installation

• This plugin could be installed by copying *.py and *.ijm to ./Plugins/Scripts/ in your Fiji/ImageJ
• You can also use ImageJ Update Site : https://sites.imagej.net/Abastien/ (soon...)

Citations

• An article is in redaction at the moment. If you use this plugin in your work for publication, please contact the author to cite properly.

License

Heterogeneous Z Correction is licensed under MIT opensource license. See https://opensource.org/licenses/MIT