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B cell receptor annotation, partitioning, and simulation

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partis

partis is an HMM-based framework for B-cell receptor sequence annotation, simulation, and clonal family inference. It is built on top of the ham HMM compiler, and also uses the ighutil set of Smith-Waterman annotation tools.

The following two papers describe the annotation and clonal family inference functionality of partis, respectively:

partis is free software under the GPL v3.

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B cell receptor annotation, partitioning, and simulation

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  • Python 39.4%
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