-
Notifications
You must be signed in to change notification settings - Fork 129
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
[ENH] add anat dataset with task (#343)
* add anat dataset with task * update README * fix task name
- Loading branch information
Showing
123 changed files
with
4,845 additions
and
10 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,7 @@ | ||
1.0.2 2022-11-30 | ||
- Added all subjects | ||
- DWI still missing due to validator issue | ||
1.0.1 2022-11-09 | ||
- Added more details to the ReadMe | ||
1.0.0 2022-11-09 | ||
- Initial Release |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,53 @@ | ||
# Datasets with and without deliberate head movements | ||
|
||
Used to evaluate the performance of markerless | ||
prospective motion correction and selective reacquisition | ||
in a general clinical protocol for brain MRI | ||
|
||
Head motion is one of the most common sources of artefacts in brain MRI. In this | ||
study, we evaluate the performance of markerless prospective motion correction | ||
(PMC) and selective reacquisition in a complete clinical protocol for brain MRI, | ||
comparing acquisitions with and without instructed intentional head motion. | ||
|
||
MRI and head motion data were acquired between January and March 2021 from 22 | ||
healthy adults (16 females, 6 males) aged 19-36 (mean ± standard deviation: 23.5 | ||
± 4.3) years, recruited for the Cimbi database (www.cimbi.dk). The recruitment | ||
was performed by advertisement for different research projects, with approval by | ||
the Ethics Committee of Copenhagen and Frederiksberg, Denmark (protocol number | ||
H-KF-2006-20). Written informed consent was obtained from each participant. | ||
|
||
The MRI scan protocol consisted of six different 2D- and 3D-encoded sequences, | ||
which were completed by a different number of participants: 3D T1 MPR (n=22), 3D | ||
T2 dark fluid (FLAIR) (n=10), 2D T1 STIR (n=22), 2D T2 TSE (n=22), 2D T2\* GRE | ||
(n=19) and 2D DWI (n=10). Note, currently the DWI are not shared yet, but they | ||
will be shared asap. Four scans were acquired for each sequence: two without | ||
intentional head motion (referred to as ‘still’) and two with a predefined | ||
nodding motion (‘nod’). For the T1 MPR sequence, two additional scans with | ||
shaking motion were acquired (‘shake’). The participants were instructed to | ||
perform two periods of nodding or shaking motion for 40 seconds during the | ||
middle of the acquisition, corresponding to the acquisition of the k-space | ||
center for the 3D-encoded sequences. | ||
|
||
The scans with and without PMC were acquired in the following order: | ||
|
||
- Still, no correction | ||
- Still, PMC | ||
- Nod motion, no correction (+ selective reacquisition) | ||
- Nod motion, PMC (+ selective reacquisition) | ||
- Shake motion, no correction (+ selective reacquisition) - ONLY MPRAGE | ||
- Shake motion, PMC (+ selective reacquisition) - ONLY MPRAGE | ||
|
||
Note that: | ||
- run-01 indicates the still scans, | ||
- run-02 indicates the nodding scans | ||
- run-03 indicates the shaking scans. | ||
|
||
Nodding motion was chosen as the primary motion pattern based on results of a | ||
[previous study](https://www.frontiersin.org/articles/10.3389/fradi.2021.789632/full) , where | ||
nodding rotation was found to be significantly larger than the rotational | ||
components around the other axes for awake children. Rigid-body head motion was | ||
measured with the optical tracking system Tracoline (TracInnovations, Ballerup, | ||
Denmark). | ||
|
||
More details regarding the acquisition protocol can be seen in our preprint | ||
https://psyarxiv.com/vzh4g. |
Oops, something went wrong.