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@bioasp

BioASP

ASP-based software for Systems Biology

Pinned

  1. meneco meneco Public

    Ⓜ️ Metabolic network completion

    Jupyter Notebook 9 9

  2. caspo caspo Public

    Reasoning on the response of logical signaling networks with Answer Set Programming

    Python 12 3

  3. caspots caspots Public

    Forked from pauleve/caspots

    Boolean network inference from time series data with perturbations

    Python 2

  4. iggy iggy Public

    ↗️ Influence graph analysis, consistency check, diagnosis, repair and prediction

    Rust 5 3

  5. exdesi exdesi Public

    Design experiments to differentiate interaction graph models

    TeX 1

  6. precursor precursor Public

    Compute minimal metabolic precursors sets that enable the production of target metabolites

    Python 2

Repositories

Showing 10 of 16 repositories
  • merrin Public

    MERRIN - MEtabolic Regulation Rule INference

    Python 0 0 0 0 Updated Apr 23, 2024
  • bonesis Public

    Synthesis of Most Permissive Boolean Networks from network architecture and dynamical properties

    Python 6 0 0 0 Updated Apr 13, 2024
  • iggy Public

    ↗️ Influence graph analysis, consistency check, diagnosis, repair and prediction

    Rust 5 GPL-3.0 3 1 5 Updated Jul 17, 2023
  • meneco Public

    Ⓜ️ Metabolic network completion

    Jupyter Notebook 9 GPL-3.0 9 4 1 Updated Feb 17, 2023
  • caspo Public

    Reasoning on the response of logical signaling networks with Answer Set Programming

    Python 12 GPL-3.0 3 1 0 Updated Sep 11, 2022
  • Jupyter Notebook 0 0 0 0 Updated Jun 20, 2022
  • ingranalyze Public archive

    Influence graph analysis, consistency check, diagnosis, repair and prediction

    Python 4 GPL-3.0 0 0 0 Updated Aug 28, 2021
  • Jupyter Notebook 0 0 0 0 Updated Jul 5, 2021
  • caspots Public Forked from pauleve/caspots

    Boolean network inference from time series data with perturbations

    Python 2 2 0 0 Updated Apr 13, 2020
  • meneco-gui Public

    a simple gui for meneco

    Python 1 GPL-3.0 0 0 0 Updated Apr 6, 2020

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