Skip to content

Issues: biocommons/uta

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

22 Open 212 Closed
22 Open 212 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Consider standardized schema for transcripts keep alive exempt issue from staleness checks
#241 opened May 4, 2023 by holtgrewe
3
Add support for the telomer-to-telomer assembly (T2T) keep alive exempt issue from staleness checks
#234 opened Jul 31, 2021 by andreasprlic
4
ENSEMBL transcripts not versioned keep alive exempt issue from staleness checks
#233 opened Jun 9, 2021 by ahwagner
7
RFC: Should we migrate to fully-justified alignments? resurrected
#222 opened Sep 10, 2019 by reece
3
collected notes for next update resurrected
#221 opened Sep 9, 2019 by reece
5
HGNC Values are Missing on Some Transcripts resurrected
#217 opened Mar 19, 2019 by akeeeshi
6
am37.c_to_g(hp.parse_hgvs_variant('NM_005117.2:c.295C>T')) fails with Alignment is incomplete. resurrected
#216 opened Jan 18, 2019 by jfreidin
3
Update Ensembl data resurrected
#207 opened May 4, 2017 by reece
3
add new transcript digests resurrected
#205 opened Mar 14, 2017 by reece
3
uta schema overhaul resurrected
#204 opened Mar 14, 2017 by reece
3
Use entrez gene_ids rather than symbols to link genes and transcripts resurrected
#203 opened Mar 8, 2017 by reece
3
UTA should use cigar strings from NCBI's gff files whenever possible resurrected
#201 opened Dec 22, 2016 by reece
3
Don't align transcripts with different numbers of exons enhancement New feature or request
#195 opened Sep 28, 2015 by reece 0.3.0
4
uta_20150827 is missing ENSP accessions and sequences bug Something isn't working
#194 opened Sep 16, 2015 by reece 0.2.x
2
drop sqlalchemy, rework creation + loading enhancement New feature or request
#187 opened Jun 18, 2015 by reece 0.3.0
1
Add assembly data to UTA enhancement New feature or request
#174 opened May 26, 2015 by reece 0.3.0
build UTA REST interface / refactor UTA client packaging enhancement New feature or request
#164 opened Jun 15, 2014 by reece 0.3.0
3
add min,max bounds to transcript and gene summaries enhancement New feature or request
#162 opened Jun 13, 2014 by reece 0.3.0
1
enable multiple alignments per <tx,ref,method> enhancement New feature or request
#160 opened May 24, 2014 by reece 0.3.0
1
implement stable views for common uses (particularly hgvs) enhancement New feature or request
#155 opened Feb 24, 2014 by reece 0.3.0
add history/log table enhancement New feature or request
#143 opened Feb 12, 2014 by reece 0.3.0
load lrg sequences
#138 opened Feb 9, 2014 by reece 0.3.0
ProTip! Adding no:label will show everything without a label.