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36 Open 33 Closed
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Issues list

Docker image does not contain necessary python env
#277 opened Apr 25, 2024 by gabeng
VarSim generated readnames too long for SAM/BAM
#276 opened Apr 24, 2024 by gabeng
2
somatic vcf is empty
#275 opened Oct 8, 2023 by Tina610
varsim somatic errors for run_randvcf
#274 opened Oct 7, 2023 by Tina610
Simulate Synthetic Reads with Structural Variants for a Given DGV
#268 opened Mar 29, 2022 by fardokhtsadat
1
Varsim build successfully but python packages aren't loadable bug
#260 opened Sep 2, 2021 by gtollefson
12
varsim install error
#251 opened Feb 2, 2021 by biott
1
VarSim: Large structural variants (DELs) are not simulated.
#249 opened Oct 23, 2020 by bioinfo89
VarSim error: ALT column is malformated: Found illegal character: 46
#248 opened Oct 22, 2020 by bioinfo89
Reads covered by variants
#230 opened Oct 23, 2019 by ranijames
1
[ERROR] Failed to execute goal org.codehaus.mojo:versions-maven-plugin:2.7:set (default-cli): Goal requires a project to execute but there is no POM in this directory
#229 opened Oct 23, 2019 by zhangyafeng1
5
inconsistent quality strings in error free sam file
#225 opened Oct 21, 2019 by jazberna1
1
reduce the number of simulated clipped reads
#224 opened Oct 18, 2019 by jazberna1
4
monitor_process fails to kill process halfway
#198 opened May 10, 2019 by jayaramanp
1
Weird coverage profile for spike in fastqs question
#197 opened Apr 29, 2019 by jayaramanp
2
Error in RandDGVtoVCF of varsim_multi
#191 opened Mar 13, 2019 by thomas-davis
8
argument simulator_exectuable is required question
#181 opened Dec 14, 2018 by tgong1
2
Varsim support for python3 enhancement
#169 opened Aug 28, 2018 by roger-liu-bina
@yunfeiguo
2
VarSim 0.8.2 fails to add INV, DEL bug
#160 opened Mar 22, 2018 by Chandralinjo
3
Simulate Single-end reads
#158 opened Mar 14, 2018 by Pitithat-pu
1
handle copy number loss in dgv bug
#156 opened Feb 28, 2018 by yunfeiguo
Exception: Aborting... Please check log for details. bug
#148 opened Feb 8, 2018 by haoziyeung
@yunfeiguo
8
vcfcompare compelx variants enhancement
#146 opened Feb 6, 2018 by roger-liu-bina
@yunfeiguo
1
AttributeError: 'Logger' object has no attribute 'write' bug
#144 opened Feb 6, 2018 by haoziyeung
@yunfeiguo
1
could VarSim simulate WES CNV?
#141 opened Dec 13, 2017 by Eric4Wu
1
ProTip! no:milestone will show everything without a milestone.