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Bionano Genomics

Tools here are not fully validated yet, but still in development stage.

14 followers
San Diego
http://www.bionanogenomics.com
dev@bionanogenomics.com

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Popular repositories

JBrowsePlugin JBrowsePlugin Public

JBrowse plugin to support BioNano Genomics files

JavaScript 7 3
cmap2fa cmap2fa Public

Tool for Transforming CMAP to FASTA Format

Perl 3 1
File-Format-Specification-Sheets File-Format-Specification-Sheets Public

Specifications for Bionano Genomic proprietary file formats

2
splitSaphyrBNXByScan splitSaphyrBNXByScan Public

Python 2 1
smap2vcf smap2vcf Public

Tool for Transforming SMAP to VCF Format

1 1
svmerge2vcf svmerge2vcf Public

Tool for Transforming SVMerge to VCF Format

1

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Showing 10 of 12 repositories

molecule_distance Public

R 0 0 0 0 Updated Apr 9, 2024
local_guided_assembly Public

Shell 0 0 0 0 Updated Apr 9, 2024
virtual_karyotype_snakemake Public
This repository contains a Snakemake workflow for the generation and visualization of virtual karyotypes.

Python 1 0 1 0 Updated Dec 19, 2023
HRD Public

Perl 0 0 0 0 Updated May 2, 2023
splitSaphyrBNXByScan Public

Python 2 1 0 0 Updated Sep 23, 2020
smap2vcf Public
Tool for Transforming SMAP to VCF Format

1 MIT 1 1 0 Updated Jan 31, 2020
svmerge2vcf Public
Tool for Transforming SVMerge to VCF Format

1 0 1 0 Updated Jan 31, 2020
File-Format-Specification-Sheets Public
Specifications for Bionano Genomic proprietary file formats

2 0 1 0 Updated Jan 23, 2020
JBrowsePlugin Public
JBrowse plugin to support BioNano Genomics files

JavaScript 7 3 6 2 Updated Sep 24, 2018
ClusterArguments Public
Running the assembly command-line on a cluster requires a properly configured clusterArgument.xml file (-C parameter). Users need to configure the clusterArguments_custom.xml for their own cluster.

1 1 0 0 Updated Dec 20, 2017

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