Fixing test_NCBI_BLAST_tools.py to run on older BLAST+

biopython · Aug 28, 2010 · 176c277 · 176c277
1 parent 2dcb6ed
commit 176c277
Showing 1 changed file with 7 additions and 0 deletions.
diff --git a/Tests/test_NCBI_BLAST_tools.py b/Tests/test_NCBI_BLAST_tools.py
@@ -192,6 +192,13 @@ def check(self, exe_name, wrapper) :
             #These appear to have been removed in BLAST 2.2.24+
             #(which seems a bit odd - TODO - check with NCBI?)
             extra = extra.difference(["-num_threads"])
+        if exe_name in ["tblastn", "tblastx"]:
+            #These appear to have been removed in BLAST 2.2.24+
+            extra = extra.difference(["-db_soft_mask"])
+        #This was added in BLAST 2.2.24+ to most/all the tools, so
+        #will be seen as an extra argument on older versions:
+        if "-seqidlist" in extra:
+            extra.remove("-seqidlist")
 
         if extra or missing:
             raise MissingExternalDependencyError("BLAST+ and Biopython out "