PhyloXMLIO: fixed Bug 3044, parsing node_id elements

biopython · Apr 7, 2010 · 218a2e6 · 218a2e6
1 parent 7fd7812
commit 218a2e6
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/Bio/Phylo/PhyloXMLIO.py b/Bio/Phylo/PhyloXMLIO.py
@@ -440,7 +440,8 @@ def _parse_clade(self, parent):
                 elif tag == 'name':
                     clade.name = collapse_wspace(elem.text)
                 elif tag == 'node_id':
-                    clade.node_id = elem.text and elem.text.strip() or None
+                    clade.node_id = PX.Id(elem.text.strip(),
+                                          elem.attrib.get('provider'))
                 elif namespace != NAMESPACES['phy']:
                     clade.other.append(self.other(elem, namespace, tag))
                     elem.clear()