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SchemaShell always uses --file param when present.
Addresses **part** of the problem described in #4174. Corrects SchemaShell's startup logic so that when a `--file` param is provided by the user, it is always used even in the case that it matches the default file name (schema.php). This solves a problem when a user wishes to provide a classname using `--name`, but still wants to use the default filename.
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