cclab-brca
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NGTAS_pipeline
NGTAS_pipeline PublicComputational pipeline to analyse Next Generation Targeted Amplicon Sequence data
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Patterns-Immune-Infiltration
Patterns-Immune-Infiltration PublicContains data and annotation used in "Patterns of Immune Infiltration in Breast Cancer and Their Clinical Implications: A Gene-Expression-Based Retrospective Study" (Ali HR et al. PLoS Med 2016)
Repositories
- clone-dynamics Public
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- MET-breast-landscapes Public
- METABRIC_methylation_profiles Public
Contains data files used in "DNA methylation landscapes of 1538 breast cancers reveal a replication-linked clock, epigenomic instability and cis-regulation" (Batra, Lifshitz et al. 2021).
- HCI011_RNAseq Public
RNA-seq processed data and analysis code for the paper: FOXM1 is a biomarker of resistance to PI3Kα inhibition in ER+ breast cancer that is detectable using metabolic imaging (Ros et al 2020).
- brcarepred Public
- NGTAS_pipeline Public
Computational pipeline to analyse Next Generation Targeted Amplicon Sequence data
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