Pinned

1. filteringTranscriptomes filteringTranscriptomes Public

   Scripts and walkthrough necessary to assemble and filter a holobiont transcriptome

   Perl 1

2. DESeq_Custom DESeq_Custom Public

   Example R script and input files for running a standard differential expression analysis using DESeq and generating summary plots

   R

3. GO_MWU GO_MWU Public

   Forked from z0on/GO_MWU

   Rank-based Gene Ontology analysis of gene expression data

   R 2

4. Spatial-Heat-Maps-in-R Spatial-Heat-Maps-in-R Public

   Create spatial heatmaps to illustrate the relative percent change in coral cover over time at a given location.

   R

5. tag-based_RNAseq tag-based_RNAseq Public

   Forked from z0on/tag-based_RNAseq

   Cost-efficient genome-wide gene expression profiling

   Perl

6. USC_HPC_scripts USC_HPC_scripts Public

   a USC-specific set of scripts needed for Tag-Seq and 2bRAD processing

   Perl