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openblas, Python package cleanup #2915
openblas, Python package cleanup #2915
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A new Pull Request was created by @davidlange6 (David Lange) for branch IB/CMSSW_9_1_X/gcc530. @cmsbuild, @smuzaffar, @iahmad-khan, @davidlange6 can you please review it and eventually sign? Thanks. |
please test |
The tests are being triggered in jenkins. |
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%define pip_name pysqlite | ||
Requires: sqlite py2-setuptools | ||
%define PipPreBuild tar xfz pysqlite-%{realversion}.tar.gz;rm pysqlite-%{realversion}.tar.gz;echo "include_dirs=$SQLITE_ROOT/include">>pysqlite-%{realversion}/setup.cfg;tar cfz pysqlite-%{realversion}.tar.gz pysqlite-%{realversion} |
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this is not completely safe btw. seems that the tarball gets left around when doing multiple attempts at building.
-1 Tested at: a306037
I found an error when building: + sed -ideleteme 's|#!.*/bin/python|#!/usr/bin/env python|' /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/0b3a9a88751c837f74829ddff3a2b8d2/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/bin/f2py '/build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/0b3a9a88751c837f74829ddff3a2b8d2/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/EGG-INFO/scripts/f2py' '/build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/0b3a9a88751c837f74829ddff3a2b8d2/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/numpy/core/tests/test_arrayprint.py' '/build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/0b3a9a88751c837f74829ddff3a2b8d2/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/numpy/distutils/from_template.py' '/build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/0b3a9a88751c837f74829ddff3a2b8d2/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/numpy/distutils/conv_template.py' sed: can't read /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/0b3a9a88751c837f74829ddff3a2b8d2/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/EGG-INFO/scripts/f2py: No such file or directory sed: can't read /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/0b3a9a88751c837f74829ddff3a2b8d2/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/numpy/core/tests/test_arrayprint.py: No such file or directory sed: can't read /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/0b3a9a88751c837f74829ddff3a2b8d2/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/numpy/distutils/from_template.py: No such file or directory sed: can't read /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/0b3a9a88751c837f74829ddff3a2b8d2/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/numpy/distutils/conv_template.py: No such file or directory error: Bad exit status from /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/rpm-tmp.sJr54a (%install) RPM build errors: Bad exit status from /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/rpm-tmp.sJr54a (%install) You can see the results of the tests here: |
actual error is
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weird - I should have had the same problem.. ok, that is easy to fix assuming I can reproduce it.
… On Mar 23, 2017, at 5:18 PM, Malik Shahzad Muzaffar ***@***.***> wrote:
actual error is
Trying to install the rpm package external+py2-nose+1.3.7-cms just built.
Checking local path dependency for rpm package external+py2-nose+1.3.7-cms just build.
Error: Local path dependency found for external+py2-nose+1.3.7-cms
/build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/slc6_amd64_gcc530/external/python/2.7.11-oenich2/bin/python
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Pull request #2915 was updated. |
The tests are being triggered in jenkins. |
-1 Tested at: 263988e
I found an error when building: + sed -ideleteme 's|#!.*/bin/python|#!/usr/bin/env python|' /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/0b3a9a88751c837f74829ddff3a2b8d2/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/bin/f2py '/build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/0b3a9a88751c837f74829ddff3a2b8d2/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/EGG-INFO/scripts/f2py' '/build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/0b3a9a88751c837f74829ddff3a2b8d2/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/numpy/core/tests/test_arrayprint.py' '/build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/0b3a9a88751c837f74829ddff3a2b8d2/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/numpy/distutils/from_template.py' '/build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/0b3a9a88751c837f74829ddff3a2b8d2/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/numpy/distutils/conv_template.py' sed: can't read /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/0b3a9a88751c837f74829ddff3a2b8d2/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/EGG-INFO/scripts/f2py: No such file or directory sed: can't read /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/0b3a9a88751c837f74829ddff3a2b8d2/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/numpy/core/tests/test_arrayprint.py: No such file or directory sed: can't read /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/0b3a9a88751c837f74829ddff3a2b8d2/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/numpy/distutils/from_template.py: No such file or directory sed: can't read /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/0b3a9a88751c837f74829ddff3a2b8d2/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/numpy/distutils/conv_template.py: No such file or directory error: Bad exit status from /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/rpm-tmp.a8I3hI (%install) RPM build errors: Bad exit status from /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/rpm-tmp.a8I3hI (%install) You can see the results of the tests here: |
-1 Tested at: 0e98a78
I found an error when building: + sed -ideleteme 's|#!.*/bin/python|#!/usr/bin/env python|' /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/41cfad3ae9fb2eb48557307da2eac2d3/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/bin/f2py '/build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/41cfad3ae9fb2eb48557307da2eac2d3/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/EGG-INFO/scripts/f2py' '/build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/41cfad3ae9fb2eb48557307da2eac2d3/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/numpy/core/tests/test_arrayprint.py' '/build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/41cfad3ae9fb2eb48557307da2eac2d3/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/numpy/distutils/from_template.py' '/build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/41cfad3ae9fb2eb48557307da2eac2d3/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/numpy/distutils/conv_template.py' sed: can't read /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/41cfad3ae9fb2eb48557307da2eac2d3/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/EGG-INFO/scripts/f2py: No such file or directory sed: can't read /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/41cfad3ae9fb2eb48557307da2eac2d3/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/numpy/core/tests/test_arrayprint.py: No such file or directory sed: can't read /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/41cfad3ae9fb2eb48557307da2eac2d3/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/numpy/distutils/from_template.py: No such file or directory sed: can't read /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/41cfad3ae9fb2eb48557307da2eac2d3/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/numpy/distutils/conv_template.py: No such file or directory error: Bad exit status from /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/rpm-tmp.7ufwiy (%install) RPM build errors: Bad exit status from /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/rpm-tmp.7ufwiy (%install) You can see the results of the tests here: |
please test (the test results are gone?) |
The tests are being triggered in jenkins. |
-1 Tested at: 0e98a78
I found an error when building: + sed -ideleteme 's|#!.*/bin/python|#!/usr/bin/env python|' /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/41cfad3ae9fb2eb48557307da2eac2d3/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/bin/f2py '/build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/41cfad3ae9fb2eb48557307da2eac2d3/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/EGG-INFO/scripts/f2py' '/build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/41cfad3ae9fb2eb48557307da2eac2d3/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/numpy/core/tests/test_arrayprint.py' '/build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/41cfad3ae9fb2eb48557307da2eac2d3/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/numpy/distutils/from_template.py' '/build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/41cfad3ae9fb2eb48557307da2eac2d3/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/numpy/distutils/conv_template.py' sed: can't read /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/41cfad3ae9fb2eb48557307da2eac2d3/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/EGG-INFO/scripts/f2py: No such file or directory sed: can't read /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/41cfad3ae9fb2eb48557307da2eac2d3/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/numpy/core/tests/test_arrayprint.py: No such file or directory sed: can't read /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/41cfad3ae9fb2eb48557307da2eac2d3/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/numpy/distutils/from_template.py: No such file or directory sed: can't read /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/41cfad3ae9fb2eb48557307da2eac2d3/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/numpy/distutils/conv_template.py: No such file or directory error: Bad exit status from /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/rpm-tmp.UjvdJX (%install) RPM build errors: Bad exit status from /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/rpm-tmp.UjvdJX (%install) You can see the results of the tests here: |
please test
On 24 Mar 2017, at 18:08, cmsbuild <notifications@github.com<mailto:notifications@github.com>> wrote:
…-1
Tested at: 0e98a78<0e98a78>
* Build:
I found an error when building:
+ sed -ideleteme 's|#!.*/bin/python|#!/usr/bin/env python|' /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/41cfad3ae9fb2eb48557307da2eac2d3/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/bin/f2py '/build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/41cfad3ae9fb2eb48557307da2eac2d3/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/EGG-INFO/scripts/f2py' '/build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/41cfad3ae9fb2eb48557307da2eac2d3/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/numpy/core/tests/test_arrayprint.py' '/build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/41cfad3ae9fb2eb48557307da2eac2d3/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/numpy/distutils/from_template.py' '/build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/41cfad3ae9fb2eb48557307da2eac2d3/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/numpy/distutils/conv_template.py'
sed: can't read /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/41cfad3ae9fb2eb48557307da2eac2d3/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/EGG-INFO/scripts/f2py: No such file or directory
sed: can't read /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/41cfad3ae9fb2eb48557307da2eac2d3/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/numpy/core/tests/test_arrayprint.py: No such file or directory
sed: can't read /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/41cfad3ae9fb2eb48557307da2eac2d3/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/numpy/distutils/from_template.py: No such file or directory
sed: can't read /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/41cfad3ae9fb2eb48557307da2eac2d3/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/numpy/distutils/conv_template.py: No such file or directory
error: Bad exit status from /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/rpm-tmp.UjvdJX (%install)
RPM build errors:
Bad exit status from /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/rpm-tmp.UjvdJX (%install)
You can see the results of the tests here:
https://cmssdt.cern.ch/SDT/jenkins-artifacts/pull-request-integration/PR-2915/18676/summary.html
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The tests are being triggered in jenkins. |
-1 Tested at: 0e98a78
I found an error when building: + sed -ideleteme 's|#!.*/bin/python|#!/usr/bin/env python|' /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/41cfad3ae9fb2eb48557307da2eac2d3/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/bin/f2py '/build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/41cfad3ae9fb2eb48557307da2eac2d3/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/EGG-INFO/scripts/f2py' '/build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/41cfad3ae9fb2eb48557307da2eac2d3/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/numpy/core/tests/test_arrayprint.py' '/build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/41cfad3ae9fb2eb48557307da2eac2d3/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/numpy/distutils/from_template.py' '/build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/41cfad3ae9fb2eb48557307da2eac2d3/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/numpy/distutils/conv_template.py' sed: can't read /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/41cfad3ae9fb2eb48557307da2eac2d3/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/EGG-INFO/scripts/f2py: No such file or directory sed: can't read /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/41cfad3ae9fb2eb48557307da2eac2d3/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/numpy/core/tests/test_arrayprint.py: No such file or directory sed: can't read /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/41cfad3ae9fb2eb48557307da2eac2d3/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/numpy/distutils/from_template.py: No such file or directory sed: can't read /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/BUILDROOT/41cfad3ae9fb2eb48557307da2eac2d3/opt/cmssw/slc6_amd64_gcc530/external/py2-numpy/1.12.1/lib/python*/site-packages/numpy-*/numpy/distutils/conv_template.py: No such file or directory error: Bad exit status from /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/rpm-tmp.g78bK8 (%install) RPM build errors: Bad exit status from /build/cmsbld/jenkins-workarea/workspace/ib-any-integration/testBuildDir/tmp/rpm-tmp.g78bK8 (%install) You can see the results of the tests here: |
strange, will try again to reproduce locally...(but means I won't merge tonight as planned.) |
I restarted the tests in jenkins and it looks good now ... externals are build and now cmssw is being tested. |
looks good now, only one unit test failed and all relval tests passed. |
-1 Tested at: 0e98a78 You can see the results of the tests here: I found follow errors while testing this PR Failed tests: UnitTests
I found errors in the following unit tests: ---> test runtestPythonAnalysis had ERRORS |
Comparison job queued. |
indeed, my local test did finish ok. Thanks! |
Python updates: migration towards pip and removal of python not in cmssw-tool-conf (all unchanged for 4+ years)
otherwise, openblas included, which should replace the need/desire for atlas libraries. numpy updated. scipy moved to pip, and should pick up the lin. algebra libraries using numpy's configuration. I still need to confirm that.
more checking needed before integrating. but lets see if there are issues at the cmssw level.