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Produce the same error when trying to install packages: Collecting package metadata (current_repodata.json): / WARNING conda.models.version:get_matcher(546): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. #13768

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BrinleyL opened this issue Apr 5, 2024 · 5 comments
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pending::support indicates user is waiting on support from triage engineers source::community catch-all for issues filed by community members type::support neither a bug nor feature, is really just a user having questions or difficulty somewhere

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@BrinleyL
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BrinleyL commented Apr 5, 2024

Checklist

  • I added a descriptive title
  • I searched open reports and couldn't find a duplicate

What happened?

I tried to install ensembl-vep package by conda but it produced the error as below and get stuck at Solving environment:

Collecting package metadata (current_repodata.json): / WARNING conda.models.version:get_matcher(546): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.7.1., but conda is ignoring the . and treating it as 1.7.1

done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): - WARNING conda.models.version:get_matcher(546): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.9.0., but conda is ignoring the . and treating it as 1.9.0
WARNING conda.models.version:get_matcher(546): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.8.0., but conda is ignoring the . and treating it as 1.8.0
WARNING conda.models.version:get_matcher(546): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.6.0., but conda is ignoring the . and treating it as 1.6.0
done
Solving environment

I can only directly close the terminal and open a new one. Then, I tried to install other packages and it produced the same errors.

Conda Info

active environment : base
    active env location : /Users/me/opt/anaconda3
            shell level : 1
       user config file : /Users/me/.condarc
 populated config files : /Users/me/.condarc
          conda version : 23.1.0
    conda-build version : 3.27.0
         python version : 3.9.12.final.0
       virtual packages : __archspec=1=x86_64
                          __osx=10.16=0
                          __unix=0=0
       base environment : /Users/me/opt/anaconda3  (writable)
      conda av data dir : /Users/me/opt/anaconda3/etc/conda
  conda av metadata url : None
           channel URLs : https://conda.anaconda.org/bioconda/osx-64
                          https://conda.anaconda.org/bioconda/noarch
                          https://conda.anaconda.org/conda-forge/osx-64
                          https://conda.anaconda.org/conda-forge/noarch
                          https://repo.anaconda.com/pkgs/main/osx-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/osx-64
                          https://repo.anaconda.com/pkgs/r/noarch
          package cache : /Users/me/opt/anaconda3/pkgs
                          /Users/me/.conda/pkgs
       envs directories : /Users/me/opt/anaconda3/envs
                          /Users/me/.conda/envs
               platform : osx-64
             user-agent : conda/23.1.0 requests/2.27.1 CPython/3.9.12 Darwin/22.5.0 OSX/10.16 aau/0.4.4 c/. s/. e/.
                UID:GID : 501:20
             netrc file : None
           offline mode : False

Conda Config

==> /Users/me/.condarc <==
channels:
  - bioconda
  - conda-forge
  - defaults

Conda list

# packages in environment at /Users/me/opt/anaconda3:
#
# Name                    Version                   Build  Channel
_ipyw_jlab_nb_ext_conf    0.1.0            py39hecd8cb5_1    defaults
aiohttp                   3.8.1            py39hca72f7f_1    defaults
aiosignal                 1.2.0              pyhd3eb1b0_0    defaults
alabaster                 0.7.12             pyhd3eb1b0_0    defaults
anaconda                  2022.05                  py39_0    defaults
anaconda-anon-usage       0.4.4            py39hfd8fc91_0    defaults
anaconda-client           1.9.0            py39hecd8cb5_0    defaults
anaconda-navigator        2.4.3            py39hecd8cb5_0    defaults
anaconda-project          0.10.2             pyhd3eb1b0_0    defaults
anyio                     3.5.0            py39hecd8cb5_0    defaults
appdirs                   1.4.4              pyhd3eb1b0_0    defaults
applaunchservices         0.2.1              pyhd3eb1b0_0    defaults
appnope                   0.1.2           py39hecd8cb5_1001    defaults
appscript                 1.1.2            py39h9ed2024_0    defaults
argon2-cffi               21.3.0             pyhd3eb1b0_0    defaults
argon2-cffi-bindings      21.2.0           py39hca72f7f_0    defaults
arrow                     1.2.2              pyhd3eb1b0_0    defaults
astroid                   2.6.6            py39hecd8cb5_0    defaults
astropy                   5.0.4            py39h67323c0_0    defaults
asttokens                 2.0.5              pyhd3eb1b0_0    defaults
async-timeout             4.0.1              pyhd3eb1b0_0    defaults
atomicwrites              1.4.0                      py_0    defaults
attrs                     21.4.0             pyhd3eb1b0_0    defaults
automat                   20.2.0                     py_0    conda-forge
autopep8                  1.6.0              pyhd3eb1b0_0    defaults
babel                     2.9.1              pyhd3eb1b0_0    defaults
backcall                  0.2.0              pyhd3eb1b0_0    defaults
backports                 1.1                pyhd3eb1b0_0    defaults
backports.functools_lru_cache 1.6.4              pyhd3eb1b0_0    defaults
backports.tempfile        1.0                pyhd3eb1b0_1    defaults
backports.weakref         1.0.post1                  py_1    defaults
bcrypt                    3.2.0            py39h9ed2024_0    defaults
beautifulsoup4            4.11.1           py39hecd8cb5_0    defaults
binaryornot               0.4.4              pyhd3eb1b0_1    defaults
bitarray                  2.4.1            py39hca72f7f_0    defaults
bkcharts                  0.2              py39hecd8cb5_0    defaults
black                     19.10b0                    py_0    defaults
blas                      1.0                         mkl    defaults
bleach                    4.1.0              pyhd3eb1b0_0    defaults
blosc                     1.21.0               h2842e9f_0    defaults
bokeh                     2.4.2            py39hecd8cb5_0    defaults
boto3                     1.21.32            pyhd3eb1b0_0    defaults
botocore                  1.24.32            pyhd3eb1b0_0    defaults
bottleneck                1.3.4            py39h67323c0_0    defaults
brotli                    1.0.9                hb1e8313_2    conda-forge
brotlipy                  0.7.0           py39h9ed2024_1003    defaults
brunsli                   0.1                  h23ab428_0    defaults
bzip2                     1.0.8                h1de35cc_0    defaults
c-ares                    1.18.1               hca72f7f_0    defaults
ca-certificates           2022.3.29            hecd8cb5_1    defaults
cachetools                4.2.2              pyhd3eb1b0_0    defaults
cctools                   973.0.1              hd9211c8_2    conda-forge
cctools_osx-64            973.0.1              h3e07e27_2    conda-forge
certifi                   2021.10.8        py39hecd8cb5_2    defaults
cffi                      1.15.0           py39hc55c11b_1    defaults
cfitsio                   3.470                hee0f690_6    defaults
chardet                   4.0.0           py39hecd8cb5_1003    defaults
charls                    2.2.0                h23ab428_0    defaults
charset-normalizer        2.0.4              pyhd3eb1b0_0    defaults
click                     8.0.4            py39hecd8cb5_0    defaults
cloudpickle               2.0.0              pyhd3eb1b0_0    defaults
clyent                    1.2.2            py39hecd8cb5_1    defaults
colorama                  0.4.4              pyhd3eb1b0_0    defaults
colorcet                  2.0.6              pyhd3eb1b0_0    defaults
conda                     23.1.0           py39h6e9494a_0    conda-forge
conda-build               3.27.0           py39h6e9494a_0    conda-forge
conda-content-trust       0.1.1              pyhd3eb1b0_0    defaults
conda-env                 2.6.0                         1    defaults
conda-index               0.4.0              pyhd8ed1ab_0    conda-forge
conda-pack                0.7.1              pyhd8ed1ab_0    conda-forge
conda-package-handling    2.2.0              pyh38be061_0    conda-forge
conda-package-streaming   0.9.0              pyhd8ed1ab_0    conda-forge
conda-repo-cli            1.0.5            py39hecd8cb5_0    defaults
conda-token               0.3.0              pyhd3eb1b0_0    defaults
conda-verify              3.4.2                      py_1    defaults
constantly                15.1.0             pyh2b92418_0    defaults
cookiecutter              1.7.3              pyhd3eb1b0_0    defaults
cryptography              3.4.8            py39h2fd3fbb_0    defaults
cssselect                 1.1.0              pyhd3eb1b0_0    defaults
curl                      7.82.0               hca72f7f_0    defaults
cycler                    0.11.0             pyhd3eb1b0_0    defaults
cython                    0.29.28          py39he9d5cce_0    defaults
cytoolz                   0.11.0           py39h9ed2024_0    defaults
daal4py                   2021.5.0         py39h24a4e90_0    defaults
dal                       2021.5.0           hecd8cb5_782    defaults
dask                      2022.2.1           pyhd3eb1b0_0    defaults
dask-core                 2022.2.1           pyhd3eb1b0_0    defaults
dataclasses               0.8                pyh6d0b6a4_7    defaults
datashader                0.13.0             pyhd3eb1b0_1    defaults
datashape                 0.5.4            py39hecd8cb5_1    defaults
debugpy                   1.5.1            py39he9d5cce_0    defaults
decorator                 5.1.1              pyhd3eb1b0_0    defaults
defusedxml                0.7.1              pyhd3eb1b0_0    defaults
diff-match-patch          20200713           pyhd3eb1b0_0    defaults
distributed               2022.2.1           pyhd3eb1b0_0    defaults
docutils                  0.17.1           py39hecd8cb5_1    defaults
entrypoints               0.4              py39hecd8cb5_0    defaults
et_xmlfile                1.1.0            py39hecd8cb5_0    defaults
executing                 0.8.3              pyhd3eb1b0_0    defaults
filelock                  3.6.0              pyhd3eb1b0_0    defaults
flake8                    3.9.2              pyhd3eb1b0_0    defaults
flask                     1.1.2              pyhd3eb1b0_0    defaults
fonttools                 4.25.0             pyhd3eb1b0_0    defaults
freetype                  2.11.0               hd8bbffd_0    defaults
frozenlist                1.2.0            py39hca72f7f_0    defaults
fsspec                    2022.2.0           pyhd3eb1b0_0    defaults
future                    0.18.2           py39hecd8cb5_1    defaults
gensim                    4.1.2            py39he9d5cce_0    defaults
giflib                    5.2.1                haf1e3a3_0    defaults
glob2                     0.7                pyhd3eb1b0_0    defaults
gmp                       6.2.1                h23ab428_2    defaults
gmpy2                     2.1.2            py39hd5de756_0    defaults
google-api-core           1.25.1             pyhd3eb1b0_0    defaults
google-auth               1.33.0             pyhd3eb1b0_0    defaults
google-cloud-core         1.7.1              pyhd3eb1b0_0    defaults
google-cloud-storage      1.31.0                     py_0    defaults
google-crc32c             1.1.2            py39h9ed2024_0    defaults
google-resumable-media    1.3.1              pyhd3eb1b0_1    defaults
googleapis-common-protos  1.53.0           py39hecd8cb5_0    defaults
greenlet                  1.1.1            py39h23ab428_0    defaults
grpcio                    1.42.0           py39ha29bfda_0    defaults
h5py                      3.6.0            py39h4a1dd59_0    defaults
hdf5                      1.10.6               hdbbcd12_0    defaults
heapdict                  1.0.1              pyhd3eb1b0_0    defaults
holoviews                 1.14.8             pyhd3eb1b0_0    defaults
hvplot                    0.7.3              pyhd3eb1b0_1    defaults
hyperlink                 21.0.0             pyhd3eb1b0_0    defaults
icu                       58.2                 h0a44026_3    defaults
idna                      3.3                pyhd3eb1b0_0    defaults
imagecodecs               2021.8.26        py39ha952a84_0    defaults
imageio                   2.9.0              pyhd3eb1b0_0    defaults
imagesize                 1.3.0              pyhd3eb1b0_0    defaults
imbalanced-learn          0.10.0             pyhd8ed1ab_0    conda-forge
importlib-metadata        4.11.3           py39hecd8cb5_0    defaults
importlib_metadata        4.11.3               hd3eb1b0_0    defaults
incremental               21.3.0             pyhd3eb1b0_0    defaults
inflection                0.5.1            py39hecd8cb5_0    defaults
iniconfig                 1.1.1              pyhd3eb1b0_0    defaults
intake                    0.6.5              pyhd3eb1b0_0    defaults
intel-openmp              2021.4.0          hecd8cb5_3538    defaults
intervaltree              3.1.0              pyhd3eb1b0_0    defaults
ipykernel                 6.9.1            py39hecd8cb5_0    defaults
ipython                   8.2.0            py39hecd8cb5_0    defaults
ipython_genutils          0.2.0              pyhd3eb1b0_1    defaults
ipywidgets                7.6.5              pyhd3eb1b0_1    defaults
isort                     5.9.3              pyhd3eb1b0_0    defaults
itemadapter               0.3.0              pyhd3eb1b0_0    defaults
itemloaders               1.0.4              pyhd3eb1b0_1    defaults
itsdangerous              2.0.1              pyhd3eb1b0_0    defaults
jdcal                     1.4.1              pyhd3eb1b0_0    defaults
jedi                      0.18.1           py39hecd8cb5_1    defaults
jinja2                    2.11.3             pyhd3eb1b0_0    defaults
jinja2-time               0.2.0              pyhd3eb1b0_3    defaults
jmespath                  0.10.0             pyhd3eb1b0_0    defaults
joblib                    1.1.0              pyhd3eb1b0_0    defaults
jpeg                      9e                   hca72f7f_0    defaults
jq                        1.6               h9ed2024_1000    defaults
json5                     0.9.6              pyhd3eb1b0_0    defaults
jsonschema                4.4.0            py39hecd8cb5_0    defaults
jupyter                   1.0.0            py39hecd8cb5_7    defaults
jupyter_client            6.1.12             pyhd3eb1b0_0    defaults
jupyter_console           6.4.0              pyhd3eb1b0_0    defaults
jupyter_core              4.9.2            py39hecd8cb5_0    defaults
jupyter_server            1.13.5             pyhd3eb1b0_0    defaults
jupyterlab                3.3.2              pyhd3eb1b0_0    defaults
jupyterlab_pygments       0.1.2                      py_0    defaults
jupyterlab_server         2.10.3             pyhd3eb1b0_1    defaults
jupyterlab_widgets        1.0.0              pyhd3eb1b0_1    defaults
jxrlib                    1.1                  haf1e3a3_2    defaults
keyring                   23.4.0           py39hecd8cb5_0    defaults
kiwisolver                1.3.2            py39he9d5cce_0    defaults
krb5                      1.19.2               hcd88c3b_0    defaults
lazy-object-proxy         1.6.0            py39h9ed2024_0    defaults
lcms2                     2.12                 hf1fd2bf_0    defaults
ld64                      609                  hd2e7500_2    conda-forge
ld64_osx-64               609                  h2487922_2    conda-forge
ldid                      2.1.2                h6a69015_3    conda-forge
lerc                      3.0                  he9d5cce_0    defaults
libaec                    1.0.4                hb1e8313_1    defaults
libarchive                3.4.2                haa3ed63_0    defaults
libcrc32c                 1.1.1                hb1e8313_2    conda-forge
libcurl                   7.82.0               h6dfd666_0    defaults
libcxx                    12.0.0               h2f01273_0    defaults
libdeflate                1.8                  h9ed2024_5    defaults
libedit                   3.1.20210910         hca72f7f_0    defaults
libev                     4.33                 h9ed2024_1    defaults
libffi                    3.3                  hb1e8313_2    defaults
libgfortran               3.0.1                h93005f0_2    defaults
libiconv                  1.16                 hca72f7f_2    defaults
libidn2                   2.3.2                h9ed2024_0    defaults
liblief                   0.11.5               he9d5cce_1    defaults
libllvm11                 11.1.0               h46f1229_1    defaults
libllvm12                 12.0.1               hd011deb_2    conda-forge
libnghttp2                1.46.0               ha29bfda_0    defaults
libpng                    1.6.37               ha441bb4_0    defaults
libprotobuf               3.19.1               h8346a28_0    defaults
libsodium                 1.0.18               h1de35cc_0    defaults
libspatialindex           1.9.3                h23ab428_0    defaults
libssh2                   1.10.0               h0a4fc7d_0    defaults
libtiff                   4.2.0                h87d7836_0    defaults
libunistring              0.9.10               h9ed2024_0    defaults
libwebp                   1.2.2                h56c3ce4_0    defaults
libwebp-base              1.2.2                hca72f7f_0    defaults
libxml2                   2.9.12               hcdb78fc_0    defaults
libxslt                   1.1.34               h83b36ba_0    defaults
libzopfli                 1.0.3                hb1e8313_0    defaults
llvm-openmp               12.0.0               h0dcd299_1    defaults
llvmlite                  0.38.0           py39h8346a28_0    defaults
locket                    0.2.1            py39hecd8cb5_2    defaults
lxml                      4.8.0            py39h65b224f_0    defaults
lz4-c                     1.9.3                h23ab428_1    defaults
lzo                       2.10                 haf1e3a3_2    defaults
markdown                  3.3.4            py39hecd8cb5_0    defaults
markupsafe                2.0.1            py39h9ed2024_0    defaults
matplotlib                3.5.1            py39hecd8cb5_1    defaults
matplotlib-base           3.5.1            py39hfb0c5b7_1    defaults
matplotlib-inline         0.1.2              pyhd3eb1b0_2    defaults
mccabe                    0.6.1            py39hecd8cb5_1    defaults
mistune                   0.8.4           py39h9ed2024_1000    defaults
mkl                       2021.4.0           hecd8cb5_637    defaults
mkl-service               2.4.0            py39h9ed2024_0    defaults
mkl_fft                   1.3.1            py39h4ab4a9b_0    defaults
mkl_random                1.2.2            py39hb2f4e1b_0    defaults
mock                      4.0.3              pyhd3eb1b0_0    defaults
more-itertools            10.2.0             pyhd8ed1ab_0    conda-forge
mpc                       1.1.0                h6ef4df4_1    defaults
mpfr                      4.0.2                h9066e36_1    defaults
mpi                       1.0                       mpich    conda-forge
mpich                     3.3.2                hc856adb_0    defaults
mpmath                    1.2.1            py39hecd8cb5_0    defaults
msgpack-python            1.0.2            py39hf7b0b51_1    defaults
multidict                 5.2.0            py39hca72f7f_2    defaults
multipledispatch          0.6.0            py39hecd8cb5_0    defaults
munkres                   1.1.4                      py_0    defaults
mypy_extensions           0.4.3            py39hecd8cb5_1    defaults
navigator-updater         0.2.1                    py39_1    defaults
nbclassic                 0.3.5              pyhd3eb1b0_0    defaults
nbclient                  0.5.13           py39hecd8cb5_0    defaults
nbconvert                 6.4.4            py39hecd8cb5_0    defaults
nbformat                  5.3.0            py39hecd8cb5_0    defaults
ncurses                   6.3                  hca72f7f_2    defaults
nest-asyncio              1.5.5            py39hecd8cb5_0    defaults
networkx                  2.7.1              pyhd3eb1b0_0    defaults
nltk                      3.7                pyhd3eb1b0_0    defaults
nose                      1.3.7           pyhd3eb1b0_1008    defaults
notebook                  6.4.8            py39hecd8cb5_0    defaults
numba                     0.55.1           py39hae1ba45_0    defaults
numexpr                   2.8.1            py39h2e5f0a9_0    defaults
numpy                     1.21.5           py39h2e5f0a9_1    defaults
numpy-base                1.21.5           py39h3b1a694_1    defaults
numpydoc                  1.2                pyhd3eb1b0_0    defaults
olefile                   0.46               pyhd3eb1b0_0    defaults
oniguruma                 6.9.7.1              h9ed2024_0    defaults
openjpeg                  2.4.0                h66ea3da_0    defaults
openpyxl                  3.0.9              pyhd3eb1b0_0    defaults
openssl                   1.1.1n               hca72f7f_0    defaults
packaging                 21.3               pyhd3eb1b0_0    defaults
pandas                    1.4.2            py39he9d5cce_0    defaults
pandoc                    2.19.2               h694c41f_1    conda-forge
pandocfilters             1.5.0              pyhd3eb1b0_0    defaults
panel                     0.13.0           py39hecd8cb5_0    defaults
param                     1.12.0             pyhd3eb1b0_0    defaults
parsel                    1.6.0            py39hecd8cb5_0    defaults
parso                     0.8.3              pyhd3eb1b0_0    defaults
partd                     1.2.0              pyhd3eb1b0_1    defaults
patch                     2.7.6             hbcf498f_1002    conda-forge
pathlib                   1.0.1            py39h6e9494a_7    conda-forge
pathspec                  0.7.0                      py_0    conda-forge
patsy                     0.5.2            py39hecd8cb5_1    defaults
pep8                      1.7.1            py39hecd8cb5_0    defaults
pexpect                   4.8.0              pyhd3eb1b0_3    defaults
pickleshare               0.7.5           pyhd3eb1b0_1003    defaults
pillow                    9.0.1            py39hde71d04_0    defaults
pip                       21.2.4           py39hecd8cb5_0    defaults
pkginfo                   1.8.2              pyhd3eb1b0_0    defaults
plotly                    5.6.0              pyhd3eb1b0_0    defaults
pluggy                    1.0.0            py39hecd8cb5_1    defaults
poyo                      0.5.0              pyhd3eb1b0_0    defaults
prometheus_client         0.13.1             pyhd3eb1b0_0    defaults
prompt-toolkit            3.0.20             pyhd3eb1b0_0    defaults
prompt_toolkit            3.0.20               hd3eb1b0_0    defaults
protego                   0.1.16                     py_0    conda-forge
protobuf                  3.19.1           py39he9d5cce_0    defaults
psutil                    5.8.0            py39h9ed2024_1    defaults
ptyprocess                0.7.0              pyhd3eb1b0_2    defaults
pure_eval                 0.2.2              pyhd3eb1b0_0    defaults
py                        1.11.0             pyhd3eb1b0_0    defaults
py-lief                   0.11.5           py39he9d5cce_1    defaults
pyasn1                    0.4.8              pyhd3eb1b0_0    defaults
pyasn1-modules            0.2.8                      py_0    defaults
pycodestyle               2.7.0              pyhd3eb1b0_0    defaults
pycosat                   0.6.3            py39h9ed2024_0    defaults
pycparser                 2.21               pyhd3eb1b0_0    defaults
pyct                      0.4.6            py39hecd8cb5_0    defaults
pycurl                    7.44.1           py39hbcfaee0_1    defaults
pydispatcher              2.0.5            py39hecd8cb5_2    defaults
pydocstyle                6.1.1              pyhd3eb1b0_0    defaults
pyerfa                    2.0.0            py39h9ed2024_0    defaults
pyflakes                  2.3.1              pyhd3eb1b0_0    defaults
pygments                  2.11.2             pyhd3eb1b0_0    defaults
pyhamcrest                2.0.2              pyhd3eb1b0_2    defaults
pyjwt                     2.8.0              pyhd8ed1ab_1    conda-forge
pylint                    2.9.6            py39hecd8cb5_1    defaults
pyls-spyder               0.4.0              pyhd3eb1b0_0    defaults
pyodbc                    4.0.32           py39he9d5cce_1    defaults
pyopenssl                 21.0.0             pyhd3eb1b0_1    defaults
pyparsing                 3.0.4              pyhd3eb1b0_0    defaults
pyqt                      5.9.2            py39h23ab428_6    defaults
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pysocks                   1.7.1            py39hecd8cb5_0    defaults
pytables                  3.6.1            py39h648f197_1    defaults
pytest                    7.1.1            py39hecd8cb5_0    defaults
python                    3.9.12               hdfd78df_0    defaults
python-dateutil           2.8.2              pyhd3eb1b0_0    defaults
python-fastjsonschema     2.15.1             pyhd3eb1b0_0    defaults
python-libarchive-c       2.9                pyhd3eb1b0_1    defaults
python-lsp-black          1.0.0              pyhd3eb1b0_0    defaults
python-lsp-jsonrpc        1.0.0              pyhd3eb1b0_0    defaults
python-lsp-server         1.2.4              pyhd3eb1b0_0    defaults
python-slugify            5.0.2              pyhd3eb1b0_0    defaults
python-snappy             0.6.0            py39h23ab428_3    defaults
python.app                3                py39hca72f7f_0    defaults
python_abi                3.9                      2_cp39    conda-forge
pytz                      2021.3             pyhd3eb1b0_0    defaults
pyviz_comms               2.0.2              pyhd3eb1b0_0    defaults
pywavelets                1.3.0            py39hca72f7f_0    defaults
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qdarkstyle                3.0.2              pyhd3eb1b0_0    defaults
qstylizer                 0.1.10             pyhd3eb1b0_0    defaults
qt                        5.9.7                h468cd18_1    defaults
qtawesome                 1.0.3              pyhd3eb1b0_0    defaults
qtconsole                 5.3.0              pyhd3eb1b0_0    defaults
qtpy                      2.0.1              pyhd3eb1b0_0    defaults
queuelib                  1.5.0            py39hecd8cb5_0    defaults
readline                  8.1.2                hca72f7f_1    defaults
regex                     2022.3.15        py39hca72f7f_0    defaults
requests                  2.27.1             pyhd3eb1b0_0    defaults
requests-file             1.5.1              pyhd3eb1b0_0    defaults
ripgrep                   12.1.1                        0    defaults
rope                      0.22.0             pyhd3eb1b0_0    defaults
rsa                       4.7.2              pyhd3eb1b0_1    defaults
rtree                     0.9.7            py39hecd8cb5_1    defaults
ruamel.yaml               0.17.40          py39ha09f3b3_0    conda-forge
ruamel.yaml.clib          0.2.8            py39ha09f3b3_0    conda-forge
ruamel_yaml               0.15.100         py39h9ed2024_0    defaults
s3transfer                0.5.0              pyhd3eb1b0_0    defaults
scikit-image              0.19.2           py39hae1ba45_0    defaults
scikit-learn              1.0.2            py39hae1ba45_1    defaults
scikit-learn-intelex      2021.5.0         py39hecd8cb5_0    defaults
scipy                     1.7.3            py39h8c7af03_0    defaults
scrapy                    2.6.1            py39hecd8cb5_0    defaults
seaborn                   0.11.2             pyhd3eb1b0_0    defaults
send2trash                1.8.0              pyhd3eb1b0_1    defaults
service_identity          18.1.0             pyhd3eb1b0_1    defaults
setuptools                61.2.0           py39hecd8cb5_0    defaults
sip                       4.19.13          py39h23ab428_0    defaults
six                       1.16.0             pyhd3eb1b0_1    defaults
smart_open                5.1.0              pyhd3eb1b0_0    defaults
snappy                    1.1.9                he9d5cce_0    defaults
sniffio                   1.2.0            py39hecd8cb5_1    defaults
snowballstemmer           2.2.0              pyhd3eb1b0_0    defaults
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spyder-kernels            2.1.3            py39hecd8cb5_0    defaults
sqlalchemy                1.4.32           py39hca72f7f_0    defaults
sqlite                    3.38.2               h707629a_0    defaults
stack_data                0.2.0              pyhd3eb1b0_0    defaults
statsmodels               0.13.2           py39hca72f7f_0    defaults
sympy                     1.10.1           py39hecd8cb5_0    defaults
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tapi                      1100.0.11            h9ce4665_0    conda-forge
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tblib                     1.7.0              pyhd3eb1b0_0    defaults
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terminado                 0.13.1           py39hecd8cb5_0    defaults
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three-merge               0.1.1              pyhd3eb1b0_0    defaults
tifffile                  2021.7.2           pyhd3eb1b0_2    defaults
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tk                        8.6.11               h7bc2e8c_0    defaults
tldextract                3.2.0              pyhd3eb1b0_0    defaults
toml                      0.10.2             pyhd3eb1b0_0    defaults
tomli                     1.2.2              pyhd3eb1b0_0    defaults
toolz                     0.11.2             pyhd3eb1b0_0    defaults
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tqdm                      4.64.0           py39hecd8cb5_0    defaults
traitlets                 5.1.1              pyhd3eb1b0_0    defaults
twisted                   22.2.0           py39hca72f7f_0    defaults
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urllib3                   1.26.9           py39hecd8cb5_0    defaults
w3lib                     1.21.0             pyhd3eb1b0_0    defaults
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webencodings              0.5.1            py39hecd8cb5_1    defaults
websocket-client          0.58.0           py39hecd8cb5_4    defaults
werkzeug                  2.0.3              pyhd3eb1b0_0    defaults
wget                      1.21.3               h6dfd666_0    defaults
wheel                     0.37.1             pyhd3eb1b0_0    defaults
widgetsnbextension        3.5.2            py39hecd8cb5_0    defaults
wrapt                     1.12.1           py39h9ed2024_1    defaults
wurlitzer                 3.0.2            py39hecd8cb5_0    defaults
xarray                    0.20.1             pyhd3eb1b0_1    defaults
xlrd                      2.0.1              pyhd3eb1b0_0    defaults
xlsxwriter                3.0.3              pyhd3eb1b0_0    defaults
xlwings                   0.24.9           py39hecd8cb5_0    defaults
xz                        5.2.5                h1de35cc_0    defaults
yaml                      0.2.5                haf1e3a3_0    conda-forge
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zeromq                    4.3.4                h23ab428_0    defaults
zfp                       0.5.5                he9d5cce_6    defaults
zict                      2.0.0              pyhd3eb1b0_0    defaults
zipp                      3.7.0              pyhd3eb1b0_0    defaults
zlib                      1.2.12               h4dc903c_2    defaults
zope                      1.0              py39hecd8cb5_1    defaults
zope.interface            5.4.0            py39h9ed2024_0    defaults
zstandard                 0.19.0           py39ha30fb19_0    conda-forge
zstd                      1.4.9                h322a384_0    defaults

Additional Context

I might mess up with conda and perl when I tried to install vep directly (without conda). After the direct installation failed, I decided to install ensembl-vep by conda. Then, I install/remove it multiple times by conda because it didn't work. I checked the similar posts online and tried to fix it by myself. I even tried to remove some duplicated perl5 folders, but things got worse.

@BrinleyL BrinleyL added the type::bug describes erroneous operation, use severity::* to classify the type label Apr 5, 2024
@travishathaway travishathaway added type::support neither a bug nor feature, is really just a user having questions or difficulty somewhere source::community catch-all for issues filed by community members and removed type::bug describes erroneous operation, use severity::* to classify the type labels Apr 8, 2024
@travishathaway
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Hi @BrinleyL,

We recommend that you update conda to the latest version so that you can take advantage of recent improvements that make solving faster.

You may need to do an intermediate update to version 23.7.0 first.

@travishathaway travishathaway added the pending::feedback indicates we are waiting on feedback from the user label Apr 8, 2024
@BrinleyL
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BrinleyL commented Apr 8, 2024

Hi @travishathaway ,

Thank you for your suggestions. I tried to run the code below to update it to the intermediate first, but it gave me the same error message.

My code:
conda install conda=23.7.0

Error message:
Retrieving notices: ...working... done
Collecting package metadata (current_repodata.json): - WARNING conda.models.version:get_matcher(546): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.7.1., but conda is ignoring the . and treating it as 1.7.1
done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): | WARNING conda.models.version:get_matcher(546): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.8.0., but conda is ignoring the . and treating it as 1.8.0
WARNING conda.models.version:get_matcher(546): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.9.0., but conda is ignoring the . and treating it as 1.9.0
WARNING conda.models.version:get_matcher(546): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.6.0., but conda is ignoring the . and treating it as 1.6.0
done
Solving environment: - failed with initial frozen solve. Retrying with flexible solve.

Then, I tried to update it directly by the code below. It still gave the similar error message.

my code:
conda update -n base conda

error message:
Collecting package metadata (current_repodata.json): / WARNING conda.models.version:get_matcher(546): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.7.1., but conda is ignoring the . and treating it as 1.7.1
done
Solving environment: done

==> WARNING: A newer version of conda exists. <==
current version: 23.1.0
latest version: 24.3.0

Please update conda by running

$ conda update -n base -c conda-forge conda

Or to minimize the number of packages updated during conda update use

 conda install conda=24.3.0

All requested packages already installed.

I run the code as suggested:
conda install conda=24.3.0
It begins to get stuck at solving environment after it gave the similar warnings:
Collecting package metadata (current_repodata.json): / WARNING conda.models.version:get_matcher(546): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.7.1., but conda is ignoring the . and treating it as 1.7.1
done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.

@conda-bot conda-bot added pending::support indicates user is waiting on support from triage engineers and removed pending::feedback indicates we are waiting on feedback from the user labels Apr 8, 2024
@travishathaway
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Hi @BrinleyL,

One other thing that you might try is to update the anaconda meta package directly:

conda update -n base anaconda

@travishathaway travishathaway added pending::feedback indicates we are waiting on feedback from the user and removed pending::support indicates user is waiting on support from triage engineers labels Apr 9, 2024
@timyerg
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timyerg commented Apr 12, 2024

Hello!
I got the same error and unfortunately updating conda base anaconda as suggested did not resolved the issue.

This command from comments above solved the issue for me:

conda install conda=24.3.0

Thanks!

@conda-bot conda-bot added pending::support indicates user is waiting on support from triage engineers and removed pending::feedback indicates we are waiting on feedback from the user labels Apr 12, 2024
@travishathaway travishathaway added pending::feedback indicates we are waiting on feedback from the user and removed pending::support indicates user is waiting on support from triage engineers labels Apr 15, 2024
@BloodLemonS
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Have you solved it?

@conda-bot conda-bot added pending::support indicates user is waiting on support from triage engineers and removed pending::feedback indicates we are waiting on feedback from the user labels May 2, 2024
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