Protocol capture for running repertoire PCA analysis

The following is a protocol capture of how to run repertoire PCA analysis according to Sevy, Soto et al. 2019. All the Python scripts necessary to run the analysis are present in this directory. Please read the file "Protocol capture.pdf" for full instructions on how to run the protocol.

Name		Name	Last commit message	Last commit date
Latest commit History 3 Commits
datasets		datasets
style		style
.gitignore		.gitignore
PCA_Utils.py		PCA_Utils.py
Protocol capture.docx		Protocol capture.docx
Protocol capture.pdf		Protocol capture.pdf
README.md		README.md
analyze_pca.py		analyze_pca.py
hip1.tsv		hip1.tsv
hip2.tsv		hip2.tsv
hip3.tsv		hip3.tsv
hivflu1.tsv		hivflu1.tsv
hivflu2.tsv		hivflu2.tsv
hivflu3.tsv		hivflu3.tsv
hivflu4.tsv		hivflu4.tsv
hivflu5.tsv		hivflu5.tsv
pca_2D_projection.pdf		pca_2D_projection.pdf
pca_PC1_heatmap.pdf		pca_PC1_heatmap.pdf
pca_PC2_heatmap.pdf		pca_PC2_heatmap.pdf
pca_explained_variance.pdf		pca_explained_variance.pdf
subsample_datasets.py		subsample_datasets.py

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Protocol capture for running repertoire PCA analysis

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