Flask webserver for rendering igv.js.
It is available through pip
with the following command:
pip install igv-flask
In order to start the Flask webserver and rendering igv.js
over an input fasta file, open your terminal and run the following command:
igv --host "0.0.0.0" --port 5000 --input ~/myfasta.fna --index ~/myfasta.fai --cytoband ~/mycytoband.txt --tracks ~/track1.txt ~/track2.txt
Run igv --help
for a complite list of available options.