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igv-flask

Flask webserver for rendering igv.js.

It is available through pip with the following command:

pip install igv-flask

How to start the webserver

In order to start the Flask webserver and rendering igv.js over an input fasta file, open your terminal and run the following command:

igv --host "0.0.0.0" --port 5000 --input ~/myfasta.fna --index ~/myfasta.fai --cytoband ~/mycytoband.txt --tracks ~/track1.txt ~/track2.txt

Run igv --help for a complite list of available options.

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Flask webserver for rendering igv.js

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