v1.0.4

ForeSeqs version 1.0.4

Removed per-site Gamma rate categories when sequences are not predicted.

Before compiling ForeSeqs, you need to install the Phylogenetic Likelihood Library

Download the tarball and run:

$ tar zvxf libpll-1.0.11.tar.gz
$ cd libpll-1.0.11
$ ./configure
$ make
$ make install

Afterwards, download foreseqs-1.0.4.tar.gz and proceed as before. Run foreseqs -h or man foreseqs for help.

v1.0.3

Version 1.0.3

Added argument -H for setting a prediction threshold in range [0,1)
A sequence will be considered as missing when the proportion of defined sites is less or equal to the threshold
For example, if a partition contains 10,000 sites and the threshold is 0.01, all sequences containing 100 defined sites or less will be predicted.

Before compiling ForeSeqs, you need to install the Phylogenetic Likelihood Library

Download the tarball and run:

$ tar zvxf libpll-1.0.11.tar.gz
$ cd libpll-1.0.11
$ ./configure
$ make
$ make install

Afterwards, download foreseqs-1.0.3.tar.gz and proceed as before. Run foreseqs -h or man foreseqs for help.

v1.0.2

Version 1.0.2

Before compiling ForeSeqs, you need to install the Phylogenetic Likelihood Library: http://libpll.org/Downloads/libpll-1.0.11.tar.gz
Download the tarball and run:

$ tar zvxf libpll-1.0.11.tar.gz
$ cd libpll-1.0.11
$ ./configure
$ make
$ make install

Afterwards, download foreseqs-1.0.2.tar.gz and proceed as before. Run foreseqs -h or man foreseqs for help.

Alternatively, you can download the precompiled ForeSeqs (foreseqs-1.0.2-linux64-binary.tar.gz). The precompiled binary does not require external libraries, but no man page or examples are included.