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25 Open 161 Closed
25 Open 161 Closed
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Issues list

RCTD results
#205 opened Jun 4, 2024 by balthasar0810
A question about "RCTD <- run.RCTD(RCTD, doublet_mode = "doublet")"
#203 opened May 25, 2024 by M-jk22
Creating a combined reference from multiple datasets
#202 opened May 15, 2024 by OdmaaBayar
RCTD on multiple spatially resolved transcriptomic datasets? Is it possible?
#201 opened May 9, 2024 by MatteoRiva95
Incorporate Spotclean results with RCTD
#199 opened Apr 16, 2024 by ayusyarif
Advice on choosing UMI_min_sigma for probe-based methods
#197 opened Mar 25, 2024 by dpcook
enhancement for RCTD function gather_results to increase speed.
#196 opened Mar 22, 2024 by szimmerman92
1
Population meta analysis multi-covariate error
#195 opened Mar 14, 2024 by zweiss22
please,i have loading this package,but it still give me this erro
#194 opened Feb 17, 2024 by zhaokunkun1
1
RCTD method's cell type weights doesn't sum to 1
#193 opened Feb 16, 2024 by Lahiru-lsb
1
Meta regression steps and Error
#191 opened Feb 8, 2024 by meaksu
1
How are the spots assigned to doublet_certain vs. doublet_uncertain and reject?
#190 opened Jan 19, 2024 by dbuszta
p vs p_cross with disease replicates?
#189 opened Jan 18, 2024 by zweiss22
Reference data for J20 Hippocampus Slide-seq analysis
#188 opened Jan 11, 2024 by Vivianstats
1
CSIDE results csv files all vs. sig
#185 opened Dec 19, 2023 by meaksu
1
gather_results is no longer exported
#184 opened Dec 14, 2023 by ppm1337
1
some parameters are set to the CSIDE vignette values, which are intended for testing but not proper execution.
#179 opened Oct 27, 2023 by sopenaml
6
Error when running run.CSIDE.replicates, doublet_mode not found in myRCTD@config
#177 opened Sep 11, 2023 by rpisalive
5
C-SIDE without RCTD cell type estimates
#174 opened Aug 28, 2023 by KaBach
1
Clustering using RCTD output
#173 opened Aug 4, 2023 by oghzzang
Error when running run.RCTD after using class_df
#170 opened Jul 31, 2023 by Hanxi-002
Unknown function run.de.single
#169 opened Jul 28, 2023 by statwangz
Error in run.CSIDE.replicates: 'object RCTD_controls not found'
#163 opened Jun 13, 2023 by krademaker
2
run RCTD for combined visium data
#160 opened Jun 5, 2023 by gebdu
2
Performing CSIDE across samples of various conditions
#145 opened Mar 31, 2023 by Dillon214
3
ProTip! Adding no:label will show everything without a label.