Nextflow workflow for applying the Sum of Single Effects (SuSiE) finemapping model to a large number of molecular QTLs.
This workflow has now been merged into the eQTL-Catalogue/qtlmap workflow and is no longer maintained independetly.
nextflow run main.nf\
--qtl_results testdata/test_input.tsv\
--cisdistance 200000 \
--vcf_genotype_field GT\
--permuted true\
--n_batches 2\
-resume \
-profile finemapping All of the dependencies of the workflow are listed in the Dockerfile. Docker container is available from eqtlcatalogue/susie-finemapping.
- Kaur Alasoo
- Masahiro Kanai