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  • Technical University of Munich
  • Freising, Germany

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Achievement: Starstruckx2Achievement: Arctic Code Vault ContributorAchievement: Pull Shark
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Pinned

  1. Captus Captus Public

    Assembly of Phylogenomic Datasets from High-Throughput Sequencing data

    Python 13 5

  2. NanoAmp NanoAmp Public

    Species identification via Nanopore sequencing of barcoded amplicons

    Python 1

  3. vcf2phylip vcf2phylip Public

    Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

    Python 257 82

  4. sam2consensus sam2consensus Public

    Get the consensus sequences from SAM (and BAM) files, ignoring the reference

    Python 10 3

  5. paralog-finder paralog-finder Public

    Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)

    Python 10 1

  6. fineRADstructure-tools fineRADstructure-tools Public

    Tools for data conversion and results visualization for fineRADstructure (http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html)

    Python 9 2