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Error : The script submitted for processing evaluated in the ScriptEngine with errors and could not be processed. Check the script submitted for syntax errors or other problems and then resubmit. : java.util.NoSuchElementException #117

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zytsai opened this issue Jul 23, 2019 · 8 comments
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Error : The script submitted for processing evaluated in the ScriptEngine with errors and could not be processed. Check the script submitted for syntax errors or other problems and then resubmit. : java.util.NoSuchElementException #117

zytsai opened this issue Jul 23, 2019 · 8 comments

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@zytsai
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zytsai commented Jul 23, 2019

I installed exakat on MAC using the documentation on exakat.readthedocs.io and get the following error message:

array (
'stackTrace' => 'java.util.NoSuchElementException
at org.apache.tinkerpop.gremlin.process.traversal.util.DefaultTraversal.next(DefaultTraversal.java:208)
at java_util_Iterator$next.call(Unknown Source)
at Script8$_run_closure1.doCall(Script8.groovy:3)
at sun.reflect.GeneratedMethodAccessor10.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:101)
at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:323)
at org.codehaus.groovy.runtime.metaclass.ClosureMetaClass.invokeMethod(ClosureMetaClass.java:263)
at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1041)
at groovy.lang.Closure.call(Closure.java:405)
at groovy.lang.Closure.call(Closure.java:421)
at org.codehaus.groovy.runtime.DefaultGroovyMethods.collect(DefaultGroovyMethods.java:3540)
at org.codehaus.groovy.runtime.DefaultGroovyMethods.collect(DefaultGroovyMethods.java:3525)
at org.codehaus.groovy.runtime.DefaultGroovyMethods.collect(DefaultGroovyMethods.java:3492)
at org.codehaus.groovy.runtime.dgm$86.invoke(Unknown Source)
at org.codehaus.groovy.runtime.callsite.PojoMetaMethodSite$PojoMetaMethodSiteNoUnwrapNoCoerce.invoke(PojoMetaMethodSite.java:244)
at org.codehaus.groovy.runtime.callsite.PojoMetaMethodSite.call(PojoMetaMethodSite.java:53)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:127)
at Script8$_run_closure2.doCall(Script8.groovy:10)
at sun.reflect.GeneratedMethodAccessor9.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:101)
at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:323)
at org.codehaus.groovy.runtime.metaclass.ClosureMetaClass.invokeMethod(ClosureMetaClass.java:263)
at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1041)
at groovy.lang.Closure.call(Closure.java:405)
at groovy.lang.Closure.call(Closure.java:421)
at org.codehaus.groovy.runtime.DefaultGroovyMethods.callClosureForLine(DefaultGroovyMethods.java:5937)
at org.codehaus.groovy.runtime.IOGroovyMethods.eachLine(IOGroovyMethods.java:457)
at org.codehaus.groovy.runtime.ResourceGroovyMethods.eachLine(ResourceGroovyMethods.java:270)
at org.codehaus.groovy.runtime.ResourceGroovyMethods.eachLine(ResourceGroovyMethods.java:236)
at org.codehaus.groovy.runtime.dgm$993.invoke(Unknown Source)
at org.codehaus.groovy.runtime.callsite.PojoMetaMethodSite$PojoMetaMethodSiteNoUnwrapNoCoerce.invoke(PojoMetaMethodSite.java:244)
at org.codehaus.groovy.runtime.callsite.PojoMetaMethodSite.call(PojoMetaMethodSite.java:53)
at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:47)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:115)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:127)
at Script8.run(Script8.groovy:6)
at org.apache.tinkerpop.gremlin.groovy.jsr223.GremlinGroovyScriptEngine.eval(GremlinGroovyScriptEngine.java:674)
at org.apache.tinkerpop.gremlin.groovy.jsr223.GremlinGroovyScriptEngine.eval(GremlinGroovyScriptEngine.java:376)
at javax.script.AbstractScriptEngine.eval(AbstractScriptEngine.java:233)
at org.apache.tinkerpop.gremlin.groovy.engine.GremlinExecutor.lambda$eval$0(GremlinExecutor.java:266)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
',
'exceptions' =>
array (
0 => 'java.util.NoSuchElementException',
),
)
@exakat
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exakat commented Jul 25, 2019

Can you find the java process running gremlin, and kill it, then restart.

ps aux | grep gremlin kill -9 <insert PID> php exakat.phar project -p <your project>

@rotemreiss
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rotemreiss commented Aug 5, 2019 •
edited

I'm having the same issue on my Mac as well.
I'm using Docker to run Exakat docker run -it --rm -w /src -v $(pwd):/src -e JAVA_OPTIONS="-Xms32m -Xmx2g" --entrypoint "/usr/src/exakat/exakat.phar" exakat/exakat:latest project -v .

I tried multiple times and I am getting the same error each time, although it does work for a single file project that I've created as a test.

Update: It worked after reducing the amount of code.

@philippechevieux
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Killing the java process running gremlin seem to work for me. I've try @exakat solution and run analyze of this project :

I will test it now on a real project.

@philippechevieux
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Never mind i still have this issue :

Error : The script submitted for processing evaluated in the ScriptEngine with errors and could not be processed. Check the script submitted for syntax errors or other problems and then resubmit. : 

 ===================  SERVER TRACE  ========================= 
array (
  'stackTrace' => 'java.util.NoSuchElementException
        at org.apache.tinkerpop.gremlin.process.traversal.util.DefaultTraversal.next(DefaultTraversal.java:208)
        at java_util_Iterator$next.call(Unknown Source)
        at Script8$_run_closure1.doCall(Script8.groovy:3)
        at sun.reflect.GeneratedMethodAccessor10.invoke(Unknown Source)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at java.lang.reflect.Method.invoke(Method.java:498)
        at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:101)
        at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:323)
        at org.codehaus.groovy.runtime.metaclass.ClosureMetaClass.invokeMethod(ClosureMetaClass.java:263)
        at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1041)
        at groovy.lang.Closure.call(Closure.java:405)
        at groovy.lang.Closure.call(Closure.java:421)
        at org.codehaus.groovy.runtime.DefaultGroovyMethods.collect(DefaultGroovyMethods.java:3540)
        at org.codehaus.groovy.runtime.DefaultGroovyMethods.collect(DefaultGroovyMethods.java:3525)
        at org.codehaus.groovy.runtime.DefaultGroovyMethods.collect(DefaultGroovyMethods.java:3492)
        at org.codehaus.groovy.runtime.dgm$86.invoke(Unknown Source)
        at org.codehaus.groovy.runtime.callsite.PojoMetaMethodSite$PojoMetaMethodSiteNoUnwrapNoCoerce.invoke(PojoMetaMethodSite.java:244)
        at org.codehaus.groovy.runtime.callsite.PojoMetaMethodSite.call(PojoMetaMethodSite.java:53)
        at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:127)
        at Script8$_run_closure2.doCall(Script8.groovy:10)
        at sun.reflect.GeneratedMethodAccessor9.invoke(Unknown Source)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at java.lang.reflect.Method.invoke(Method.java:498)
        at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:101)
        at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:323)
        at org.codehaus.groovy.runtime.metaclass.ClosureMetaClass.invokeMethod(ClosureMetaClass.java:263)
        at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1041)
        at groovy.lang.Closure.call(Closure.java:405)
        at groovy.lang.Closure.call(Closure.java:421)
        at org.codehaus.groovy.runtime.DefaultGroovyMethods.callClosureForLine(DefaultGroovyMethods.java:5937)
        at org.codehaus.groovy.runtime.IOGroovyMethods.eachLine(IOGroovyMethods.java:457)
        at org.codehaus.groovy.runtime.ResourceGroovyMethods.eachLine(ResourceGroovyMethods.java:270)
        at org.codehaus.groovy.runtime.ResourceGroovyMethods.eachLine(ResourceGroovyMethods.java:236)
        at org.codehaus.groovy.runtime.dgm$993.invoke(Unknown Source)
        at org.codehaus.groovy.runtime.callsite.PojoMetaMethodSite$PojoMetaMethodSiteNoUnwrapNoCoerce.invoke(PojoMetaMethodSite.java:244)
        at org.codehaus.groovy.runtime.callsite.PojoMetaMethodSite.call(PojoMetaMethodSite.java:53)
        at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:47)
        at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:115)
        at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:127)
        at Script8.run(Script8.groovy:6)
        at org.apache.tinkerpop.gremlin.groovy.jsr223.GremlinGroovyScriptEngine.eval(GremlinGroovyScriptEngine.java:674)
        at org.apache.tinkerpop.gremlin.groovy.jsr223.GremlinGroovyScriptEngine.eval(GremlinGroovyScriptEngine.java:376)
        at javax.script.AbstractScriptEngine.eval(AbstractScriptEngine.java:233)
        at org.apache.tinkerpop.gremlin.groovy.engine.GremlinExecutor.lambda$eval$0(GremlinExecutor.java:266)
        at java.util.concurrent.FutureTask.run(FutureTask.java:266)
        at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
        at java.util.concurrent.FutureTask.run(FutureTask.java:266)
        at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
        at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
        at java.lang.Thread.run(Thread.java:748)
',
  'exceptions' => 
  array (
    0 => 'java.util.NoSuchElementException',
  ),
)
 ============================================================ 
 
on file phar:///Users/casolutions/Documents/analysequalite/php/bin/exakat/exakat.phar/vendor/brightzone/gremlin-php/src/Connection.php
on line 847

I've already reinstall exakat + tinkergraph and kill gremlin process but still not working

@stevenscg
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stevenscg commented Aug 15, 2019 •
edited

I'm having the same issue as @philippechevieux with the same (or very similar) configuration. The project is fairly small and I have include_dirs[] = /src/ to limit the scope of the run to my project's source code directory.

Verbose output:

docker run -it --rm -e JAVA_OPTIONS="-Xms64m -Xmx2g" -w /src -v $(pwd):/src exakat/exakat:latest exakat project -v
Cleaning project
Cleaning project service
Removed 0 files
Recreating database
Search for external libraries
Processing files
'Updating service/config.cache
Running project 'service'
Running the following analysis : Security
Producing the following reports : Text
Running files
Check composer
Searching for files
Found 51 files.
Check short tag (normal pass)
Check short tag (with directive activated)
Short tag OK
Removed 1 duplicates files
Check config files
Done
Cleaning DB
Restart gremlin server
start gremlin server 3.4.x
started gremlin server
Restarted in 9 rounds
started [141] in 4,505.41 ms
Loading with \Exakat\Loader\SplitGraphson
Init finalize===============================================================>-] 98.04% 00:00:00

Error : The script submitted for processing evaluated in the ScriptEngine with errors and could not be processed. Check the script submitted for syntax errors or other problems and then resubmit. : 

 ===================  SERVER TRACE  ========================= 

....

From within the container a few minutes after launch:

docker exec -it eb2b02d29e79 /bin/sh
# ps aux
USER       PID %CPU %MEM    VSZ   RSS TTY      STAT START   TIME COMMAND
root         1 17.6  5.5 267520 113288 pts/0   Ss+  17:41   0:27 php /usr/local/bin/exakat project -v
root       127  0.0  0.0      0     0 pts/0    Z+   17:42   0:00 [gremlin-server.] <defunct>
root       141 11.2 25.0 5733892 513464 pts/0  Sl+  17:42   0:13 java -Dlog4j.configuration=file:/usr/src/exakat/tinkerg
root      4821  2.0  0.0   4276   712 pts/1    Ss   17:44   0:00 /bin/sh
root      4879  0.0  0.0   4276   740 pts/0    S+   17:44   0:00 sh -c /usr/local/bin/php -l '/src/vendor/psy/psysh/src/
root      4880  0.0  0.1  36632  2836 pts/1    R+   17:44   0:00 ps aux

I'm not familiar with gremlin, but it looks like it might be dead here.

@philippechevieux
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Any update about this issue ?

@philippechevieux
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The only solution for me was to downgrade exakat to the last working version available on my computer (1.5.8 - 19 Dec 2018)

@Maskhe
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Maskhe commented Jun 1, 2021

kill the java process works for me!!!

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@stevenscg @rotemreiss @zytsai @exakat @philippechevieux @Maskhe