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Pinned

  1. Ragout Ragout Public

    Chromosome-level scaffolding using multiple references

    Python 142 27

  2. maf2synteny maf2synteny Public

    A tool for recovering synteny blocks from multiple alignment

    C++ 28 7

  3. KolmogorovLab/hapdup KolmogorovLab/hapdup Public

    Pipeline to convert a haploid assembly into diploid

    Python 83 8

  4. pbclip pbclip Public

    A simple tool to fix PacBio fasta/q that was not properly split into subreads

    C++ 14 1

  5. KolmogorovLab/hapdiff KolmogorovLab/hapdiff Public

    SV calling for diploid assemblies

    Python 23 2

  6. Flye Flye Public

    De novo assembler for single molecule sequencing reads using repeat graphs

    C 731 160