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@fraenkel-lab

The Fraenkel Lab at MIT

We are developing computational and experimental approaches to search for new therapeutic strategies for diseases.

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  1. OmicsIntegrator OmicsIntegrator Public archive

    This repository is the working directory for the Garnet-Forest bundle of python scripts for analyzing diverse forms of 'omic' data in a network context.

    Python 31 21

  2. pcst_fast pcst_fast Public

    A fast implementation of the Goemans-Williamson scheme for the prize-collecting Steiner tree / forest problem.

    C++ 42 15

  3. GSLR GSLR Public

    An algorithm for classification from a graph-sparse support

    Jupyter Notebook 15 4

Repositories

Showing 10 of 16 repositories
  • OmicsIntegrator2 Public

    Prize-Collecting Steiner Forests for Interactomes

    fraenkel-lab/OmicsIntegrator2’s past year of commit activity
    Jupyter Notebook 51 BSD-3-Clause 24 13 3 Updated Jun 18, 2024
  • image-preprocessing Public
    fraenkel-lab/image-preprocessing’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 11, 2024
  • neurodegeneration-network Public

    scripts used to generate the analysis and figures in the manuscript A systems-biology approach connects aging mechanisms with Alzheimer’s disease pathogenesis, Leventhal et al.

    fraenkel-lab/neurodegeneration-network’s past year of commit activity
    HTML 0 0 0 0 Updated Mar 17, 2024
  • pcst_fast Public

    A fast implementation of the Goemans-Williamson scheme for the prize-collecting Steiner tree / forest problem.

    fraenkel-lab/pcst_fast’s past year of commit activity
    C++ 42 MIT 15 3 0 Updated Jan 29, 2024
  • shh-mben Public
    fraenkel-lab/shh-mben’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Dec 5, 2023
  • imaging-resources Public
    fraenkel-lab/imaging-resources’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Nov 10, 2023
  • mogp Public

    Mixture of Gaussian Processes Model for Sparse Longitudinal Data

    fraenkel-lab/mogp’s past year of commit activity
    Jupyter Notebook 26 BSD-3-Clause 1 1 0 Updated Dec 6, 2022
  • GarNet Public
    fraenkel-lab/GarNet’s past year of commit activity
    HTML 4 2 6 2 Updated Jun 21, 2022
  • QBD Public
    fraenkel-lab/QBD’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 26, 2019
  • galaxy-neurolincs Public

    The NeuroLINCS Galaxy Flavor

    fraenkel-lab/galaxy-neurolincs’s past year of commit activity
    Jupyter Notebook 3 3 1 0 Updated Apr 16, 2019
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