The extended pipeline depends on the following software. We list the recommended and tested versions for each release of taxator-tk starting from v1.3.3
Note, that the versions that can be installed via package manager in recent Linux distributions may differ and may be incompatible. For this reason, and to be most reproducible, I recommend to install the exact versions listed below, which are also containted in the binary extended release package.
If you use a different setup, please report all program versions with your results.
Files: core binaries License: GPLv3 Link: https://github.com/fungs/taxator-tk/ Version: 1.5.0 Included: yes
Files: blastn, makeblastdb License: public domain software Link: ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/ Version: 2.11.0+ Included: no
Files: lastal, lastdb, last-merge-batches License: GPLv3 Link: http://last.cbrc.jp Version: 1170 Included: no
Files: parallel License: GPLv3 Link: http://www.gnu.org/software/parallel/ Version: 20201222 Included: yes
Files: orfm License: LGPLv3 Link: https://github.com/wwood/OrfM Version: 0.7.1 Included: yes
Files: ktImportText, ktGetLibPath License: KRONA™ open-source license Link: https://github.com/marbl/Krona Version: 2.7.1 Included: no
Files: lz4 License: BSD and GPLv2 Link: https://github.com/lz4/lz4/ Version: 1.9.3 Included: no
Files: core binaries License: GPLv3 Link: https://github.com/fungs/taxator-tk/ Version: 1.4.0 Included: yes
Files: blastn, makeblastdb License: public domain software Link: ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/ Version: 2.11.0+ Included: no
Files: lastal, lastdb, last-merge-batches License: GPLv3 Link: http://last.cbrc.jp Version: 1170 Included: no
Files: parallel License: GPLv3 Link: http://www.gnu.org/software/parallel/ Version: 20201222 Included: yes
Files: ktImportText, ktGetLibPath License: KRONA™ open-source license Link: https://github.com/marbl/Krona Version: 2.7.1 Included: yes
Files: lz4 License: BSD and GPLv2 Link: https://github.com/lz4/lz4/ Version: 1.9.3 Included: no
Files: core binaries License: GPLv3 Link: https://github.com/fungs/taxator-tk/ Version: 1.3.3 Included: yes
Files: blastn, makeblastdb License: public domain software Link: ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/ Version: 2.2.28+ Included: no
Files: lastal, lastdb, last-merge-batches License: GPLv3 Link: http://last.cbrc.jp Version: 545 Included: no
Files: parallel License: GPLv3 Link: http://www.gnu.org/software/parallel/ Version: 20150307 Included: yes
Files: ktImportText, ktGetLibPath License: KRONA™ open-source license Link: http://krona.sourceforge.net/ Version: 2.4 Included: yes
Files: lz4 License: BSD and GPLv2 Link: https://github.com/lz4/lz4/ Version: r126 Included: no